LOC113524983


Basic Information

Item Value
gene id LOC113524983
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1350316 ~ 1420706 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299353.1
TTGTGTGTTTCATGAAACTGGAACAAAAATCACTACGAACTGCTGGTTTAGCAAGTTATTCCGAAGTGTAGTTGTTGTGACCGCAGTAGCAGAAAGGAGAAAAGCTTTTACCAAGAAGATTCTCTACAGATTAATTCTGTTTAAGCTCTGCAGGAATGGAGCACAGATCCATTCACGTCCTTGTGGAAGTCCTGTTCTTCCTCACGATTAGTTTTCCTCGGGCATCTGCAGacacacactctctgcagTACCTCTACACTGCCGTCACACCAGGAATAAATTTCCCAGAGTTCACTGCTGTTGGTCTGGTGGACGGAGAGCAGTTTGTGTACTATGACAGCAACATCAGGAAGATGATCCCAAGGACAGAGTGGATAAATAAGATTGATGCTGATGATCCAGATTACTGGAACAGGCGAACACGTGAGATGCAGAGTCATCAGGAGAATCTGAAACAGCTCTTAGCTACAGTAATGCAACACTATAATCACGCTAAAGgAGTTCATATACTACAGTGGATGTACGGCTGTGAGCTCGATGATGACGGCACCACTAGAGGATACACTCAGTACGGTTATGATGGAGAAGATTTCATCACTTTTGATCTGAAAACTCTCACCTGGATCGCTCCGACACCTCAAGCTGTGATCACCAAACACAAGTGGGATGCTGACACTGGTCGGAATTATCAGTGGAAGAACTACCTGGAGAAAGAGTGTATCGAGTGGTTAAAGAAGTATGTGACTTACAGCAGAGAGACTCTGGAGAGGAAAGttcGTCCCGAGGTGTCAGTGTTCCAAAAGGACTCCACCTATCCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGATGATCTCCTGGCAGGAGGACGGATGGGACACGTATGAGGACGTGGAGCTCAGAGAGACGTTACCCAACCTGGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTCCCAGCTGAGGTGCTGCAGAAACACACCTACACCTGCGTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCCGTGAGCGAGCGCCGAATCCTGAATCCTGGTTTGCTCTCAGAGCCTCTGGTCTCTTCAACTTTGGAGGCAGAAGCTGGAGATACTGTCACTATTTGGTGCCAACATAACCTGAATTATCGAGGTTCCATCTTCTGGTTTAAACACACGAGTGATTCAGTTCCACGTCTTCTTGGGTGCAAACAGATTTTTACATCAGCTGCATCATATCCGTGTTCCTACTTTACTGAAACTGAGCGCATGGTGATGGCTGTTCAGGGCAGATTCACGTCTCTCACAATCACTGCAGTAAATGTCTCTGATACAGGACTCTATTACTGCAGCTCCATGCAAATGGACCGAATTAACTTTAGCAACTCGACCTCTTTCCATGTGAAAGACAGAAACAAAATACTTTCTGAGAACTTGGACAGAGCGACagGTTCAGTCTCTTCTGCTGTGTTCTTCATGCTGACTGTGGTGTTTGGTGTAGTGATTGTGATTCTTCTCGCTGTCCTGATCTTCACcatgctgaagaaaaaaacatacagaggtgTTGAGGCAGAAGATAATATGGCTCGTGCAGTTCTGAAAGCTCTGATTTTCCTCACAGtttctcttcatctttcatCAGCAGtcacacactctctgCAGTACATCTACACTGCAGTTACAGGAATAAATTTCCCAGAATTCACTGCTGTGGGTCAGGTGGATGGAGAGCAGTTTAGCTACTACGATAGTAACATCAGGCGAGAGACGCCGAAGACGGAGTGGATACAGAAGATCAACGCTGAGGATCCAGATTACTGGAGCAGAAATACACAGAAGCAGCAGGGTGCTCAGGAGGTCTACAGAGTCAATGTGGCTACAGCAATGCAGCGCTTTAACCAGACTAAAggagttcACACAGTGCAGATGATGTGCGGCTGGCGTGATGATGACGGCACCACTAGAGGATACACTCAGTGCGGTTATGATGGAGAAGATTTCCTCAGTCTGGATCTGAAAACTAAAACCTGGATTGCAGCTAAACCTCAAGCTGTGATCACCAAACACAAGTGGGATTCTACAGGAGCTGAGGCTAATGACATGAAGAACTACCTGCAGAACACCTGTATCAAGTGGTTAAAGAAGTACGTGTCTTACGGCAGAGAGACTCTGGAGAGGAAAGttcGGCCCGAGGCTTCACTGTTCCAGAAACACTCTCCTTCTGCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGGTGATCTCCTGGCAGAAGGACGGAGAGGAGGTGCATgagaatgtggagctcagagagACGTTACCCAACCAGGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACACCTACACCTGCGTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAGAGTTCCAGATAGAGAATCAGGTTTGCTCTCAGAGCCTCTGGTCTCTTCAACTTTGGAGGCAGAAGCTGGAGATACTGTCACTATTTGGTGCCAACATAACCTGAATTATCGAGGTTCCATCTTCTGGTTTAAACACACGAGTGATTCAGTTCCACGTCTTCTTGGGTGCAAACAGATTTTTACATCAGCTGCATCATATCCGTGTTCCTACTTTACTGAAACTGAGCGCATGGTGATGGCTGTTCAGGGCAGATTCACGTCTCTCACAATCACTGCAGTAAATGTCTCTGATACAGGACTCTATTACTGCAGCTCCATGCAAATGGACCGAATTAACTTTAGCAACTCGACCTCTTTCCATGTGAAAGACAGAAACAAAATACTTTCTGAGAACTTGGACAGAGCGACagGTTCAGTCTCTTCTGCTGTGTTCTTCATGCTGACTGTGGTGTTTGGTGTAGTGATTGTGATTCTTCTCGCTGTCCTGATCTTCACcatgctgaagaaaaaaacatacagaggtgTTGAGGCAGAAGATAATTAGGTAACTCTGAGACTCAAAACCAAAAAGGAG

Function

GO: NA

KEGG:

id description
K06751 MHC1; MHC class I antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299353.1 True 3047 mRNA 0.47 18 1350316 1420706

Neighbor

gene id symbol gene type direction distance location
LOC113528146 NA coding downstream 33929 1314499 ~ 1316387 (-)
LOC117595981 NA coding downstream 52508 1293874 ~ 1297808 (-)
LOC117595953 mvk coding downstream 92374 1251870 ~ 1257942 (-)
LOC117595980 NA coding downstream 110267 1236871 ~ 1240049 (-)
tchp tchp coding downstream 119668 1188924 ~ 1230648 (-)
LOC113524989 NA coding upstream 4393 1425099 ~ 1431481 (-)
LOC113528310 NA coding upstream 12300 1433006 ~ 1442192 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 114889 1535595 ~ 1558524 (-)
fam151b fam151b coding upstream 465946 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 471562 1892268 ~ 1900064 (-)
LOC113524984 NA non-coding downstream 10475 1338808 ~ 1339841 (-)
G348001 NA non-coding downstream 15379 1227126 ~ 1334937 (-)
LOC117595965 NA non-coding downstream 38822 1309689 ~ 1311494 (-)
LOC117595969 NA non-coding downstream 65321 1264805 ~ 1284995 (-)
G347969 NA non-coding downstream 73103 1095034 ~ 1277213 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 75704 1496410 ~ 1496871 (-)
LOC117595968 NA non-coding upstream 162014 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding upstream 177764 1598470 ~ 1598542 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding upstream 211485 1632191 ~ 1638134 (-)
G348067 NA non-coding upstream 272437 1693143 ~ 1795534 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 71449 1268309 ~ 1278867 (-)
G347960 NA other downstream 271177 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 425649 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 884061 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 982577 364006 ~ 367739 (-)
LOC117595719 NA other upstream 29629 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 84933 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 407192 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 561348 1982054 ~ 2127645 (-)
G348145 NA other upstream 575196 1995902 ~ 1998470 (-)

Expression


Co-expression Network