LOC113542600 (LOC108255798)


Basic Information

Item Value
gene id LOC113542600
gene name LOC108255798
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6218805 ~ 6230283 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299371.1
ATGATATCACTGAGTCGTAACATTTTCTCAGAAAAGTTATCTGAGGCGAAATGGAGGCTGTCCACGTTTGGGATTGTTGCTCTGGATGGTTCAGGAGCAGGTGCTGGAGGAAGTGGACATGTCCCAGTCTCCTCAGAGGCCTACAGACATCTGCAGAGGAAAAAGACTGAATTACATAAACTTAAAATGGCTGTTGGGGAATTTTATCTGAGTCTGGCGTTTCTCCAGAGCTACCAGGAGCTGAACTACCAAGCATTGAATGAATCACATCTAGAGCAACTGAAGCCACTGCTACAACTCTACAGAGGGAGTTTTCTGCTGATCGAGTTCCTGTCACTGATGGGATTATCCATGTATTGCTGGAGAAGATCTGGAATCAATCACATTCTCATTTTTGAGCTGGATCCTAGACATCACTTATCACATCATCACGTTTTAGAGGTGGCAGGATACTTGGCTGTATGTTGTTGTATTAGTGTGTTGGCCTGGCTACATCCTTCATTCATGTCAATCCCACAACAGCTCCACCCCCTTTTATTCCACAGTCTTTTGCTGTTCTTGCTGTTAAACCCCACATCTACTTGTCACTCTGGGTCTCGTCACTGGTTTCTTGCTGTGATGTGGAAGGTCCTGACAGCACCTCTCTGGCCTGTTGGGTTTGCAGATTGCTGGCTGGCTGACCAGCTCAACAGTCTGAGTCCTGTTATCTTGAGCCTGTGGGACCTGCTGTGCTTCTACACCTTTCAGATAAACTGGGCAGATCTGCAGGATGGCAGCTCTCTGGTTAGAGAGAGTGTGGACTGGGAAAGGCAGAGCAAAATAGTCATATGTCTGATTCAATGCTTCCCTCCATGGCTGAGGTTTGCTCAGTGTCTTAGAGACTTCTGGGACAGTGGAAACACAGTGCATCTCCTTAATGCTGGCAAATACTCCACTGTCTTTCTCATGGTCACATTTGCAGGTCTCTACAACACAGCAAGAGAGAAGTCTGATCCGGCCATGGaggagagtgtgtatgtgtatctgtacCTGTGGGCCATGTCTACCTGCATAAGTGTAATAGTGACTGTGAGCTGGGACCTAAGGATGGACTGGGGACTGCTGCAAGGAAATGGACTTCTGAAAGAGGAGCTACTTTACTCCCGAGAgGTGTATTACTATGCAGCCATGTTAGCAGATGTGCTACTGCGGATCTCTTGGGCTATTAATATCCTCTTGGCTCAGATGAAGGATTCAGCTGCTGTTGTTACTGCTAGTGCCATACTGGCTCCACTGGAGGTCCTCAGGCGTTCAATCTGGAATTTCTTTCGCCTGGAAAATGAGCACCTGAAAAACTGCAGACAGTGTCGAGCCATTCgtgattttaataatagtcCAATAAACCTGCCACAGCAGATCCTCATTGAGAAGCTGAAGGACCCAAATGAGCAGATTACTGGCCAACAGGAAACCAGTACCTCACACCGTAAACCTACTTGTTTACTATTTAGATATCTAAGatCAAGAGTTAAGGAAACAAACTTACCAGTAGAGAGCCCAGAGATGGAGTCAACGTAATGTTTATAAGGATGAAAAAGGAGCCCTTAAAATGGGCGCACACATAAATGTTGATTAGGTGCTTAGTCAGCAAGGTAAAATGTCATGATTACAGTCCCCATGTGTAATATATGAAGAAGCAGTACCAATATTTCCCTCAAAATAATACTTTCCTTTATTTCACTTCAAAATCCACCAGTAATTCAATTTTCCAGACCAGCTGATATGCAAAAATCAGGCAAGCATGTACAATACAGCAGCTTGAGCCCAAGcgaataaagaggaaaaaagagcatGGGAGGAGAAAGTGAGAGTCCAGCATTTCTCTCTCCAGAGAACTGATGTTCTCTGTTCTGCTTCCTACTCTGTGTTCAAGTCAGCAGTCCCACagtcagctgttttttttaaataaagtatctCTATGCTTTCCTCCTGTTATAGTCCAAACCCAGCAGTATAGCTTTGATATCTGAAGCAATGCACATATGTTGTGTTAATGAACAGGTTCAGCTTTTTTTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299371.1 True 2057 mRNA 0.44 10 6218805 6230283

Neighbor

gene id symbol gene type direction distance location
gpsm1a LOC108255912,LOC108423595,LOC107595532,LOC107665019 coding downstream 43170 6172304 ~ 6175635 (-)
ak5l ak5l,LOC108255392,LOC108423692,LOC107595531,LOC107731024,LOC107665022,LOC107740835 coding downstream 46649 6164767 ~ 6172156 (-)
cmlc1 cmlc1,LOC107374630,LOC108230875,LOC103473836 coding downstream 57172 6160872 ~ 6161633 (-)
ciz1b LOC108256061 coding downstream 265418 5943302 ~ 5953387 (-)
surf4l surf4l,LOC100304967,LOC108423697,LOC107595501,LOC107740812,LOC107688631,LOC103043297,LOC107665048 coding downstream 280460 5929151 ~ 5938345 (-)
fam78aa fam78aa,LOC108255801,LOC108423592,LOC107740833,LOC107731022,LOC107552624 coding upstream 5837 6236120 ~ 6239812 (-)
brd3b LOC108255802,LOC107665032,LOC107740804 coding upstream 20648 6250931 ~ 6267587 (-)
rxrab LOC108255946,LOC108423686,LOC103046247,LOC107660328,LOC107672569,LOC107552637,LOC107740802,LOC107731035 coding upstream 51411 6281694 ~ 6327828 (-)
lix1 lix1 coding upstream 213421 6443704 ~ 6452129 (-)
zbtb26 zbtb26,LOC103133383,LOC106934410,LOC106934416,LOC106930504,LOC103152387 coding upstream 246086 6476369 ~ 6479116 (-)
LOC117595975 NA non-coding downstream 276973 5938466 ~ 5941832 (-)
G350114 NA non-coding downstream 488085 5730462 ~ 5730720 (-)
LOC117595899 NA non-coding downstream 508331 5707923 ~ 5710474 (-)
G350090 NA non-coding downstream 528036 5690361 ~ 5690769 (-)
G350061 NA non-coding downstream 558490 5660100 ~ 5660315 (-)
G350513 NA non-coding upstream 78849 6309132 ~ 6310450 (-)
LOC117595904 NA non-coding upstream 152821 6383104 ~ 6388571 (-)
G350664 NA non-coding upstream 464572 6694855 ~ 6695063 (-)
G350714 NA non-coding upstream 512110 6742393 ~ 6742602 (-)
LOC113537000 NA non-coding upstream 672010 6902293 ~ 6914343 (-)
pappab LOC108255326,LOC108423596 other downstream 97846 6056981 ~ 6120959 (-)
LOC117595919 NA other downstream 639824 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 695524 5362282 ~ 5523281 (-)
G349951 NA other downstream 854523 5321513 ~ 5364282 (-)
hip1rb hip1r,LOC108255864 other downstream 891253 5248648 ~ 5327552 (-)
LOC113542569 NA other upstream 116380 6346663 ~ 6352372 (-)
G350867 NA other upstream 534631 6764914 ~ 6775149 (-)
ccdc180 ccdc180 other upstream 1355189 7585472 ~ 7597962 (-)
card9 card9 other upstream 1372624 7602907 ~ 7607466 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 2323364 8553647 ~ 8556676 (-)

Expression


Co-expression Network