zgc:194908 (mctp1)


Basic Information

Item Value
gene id zgc:194908
gene name mctp1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 7410907 ~ 7412377 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034299372.1
CTGAAGTGAATCGAACGACTCACGTGTGACTCACCAACTCGCGTTCGTTCTTGTGAATCGACTCGACTGAATCACTGAAAAGAGTCGTTCCAAAAGAATCGTTTGAGAATCTCCCATCAGTGGAGTCGTTTGGAAATTTAAACCTGGTGTGACAAGCCGTTCAGGTGGtcgaggatgaggatgatgaagggTGAATAACCTGCTGGTGACTTTCTATAGCTGTATTATTCATCTTGTATAACTGGAGATGAACATACTGAAGATAATGTCAGAAATGTTGgtataaaatgtacaaagtGAGCTGCATGGAAACAGGCGAATGGTGCATGGTGTTAGGTGTAAGGAGAGTATTTAAGATTTGATGCTTGTGTAATATAGATTACTTACGAATCACCTCGTCTTTGGCTTCCtcgacaattttttttaacctctctctgtctctcacacactcacacacacacatacacacacaggaaaggAACTATGCTTGCGCTATAACCAGCTTATCGCCTCGTTTAGTTCAGTGAGCGGCTAAGAAGAGTTCCTCTTGTATCGAACGCTTCTTCTGGATTGGCGGATCGATCCGGTTTGTGCGCCCTCGCGCCACAGCGTGACATTGGCGACGCCGCGCGCTCACCAGACTGGCGGGCTGCTGCTCGGGAACTATGGAGGAAAAAGCGAAGGGTGACAGCGGCAAGGAGCAAGACGCGACCTCGACATCTTACCAGCGGAAGATATGGAAGAATTTCCAGGGGAGGACAAGACCGTTTCTGAGCCCTAAACTAGGCTCGGAAAGACGCAGCGCAGACAGCAAGAAAGAGAGCGGCTTGTGGATGTTCAAGCGGAAAAAGAAACCGGTTCTGGACCGCATCTTCTCATCCTCTCAGCCGAACCTGAGCAGCTCGAGTCCGGCGTCTCTCCAGGGCGATGAAGCGGAACCGGGCTGCAGTGATGGAGCAGCGAAGTCAGCGCTGGCTGCTCTGGAAGGAGCTACTGCAATGACACACGTTTATACACATGAGGTTTCGGTGTCGGCTCACGGCAGCCCGCGGCTCGGTGTGGCTCATTTAACCGCGTCTCAGCCCAAAAGCTCGTCCTTGGGCTCGGCGTACTTTGAGACGCTCGTGCTGGACTCGGAGGCCACTTCCGGTCAGGACGAGCCGAGCAAAAACGCCAGCGATTCGAACCAACCAAAACCAAGTTTCCTATTCTGTAAAAAAGTTAGACTGGGAGCAGGAATATGGAGGGAGCAGATTATTGATGCAGTATTCACTGGGTTGAAGCCTTCCTTCCAAactgaggaagagaaagagatggatgaTCACTGTGTGGTGCTGATGTTGCACTCATGTCCatactga

Function

symbol description
mctp1 Enables calcium ion binding activity. Predicted to be involved in several processes, including modulation of chemical synaptic transmission; negative regulation of endocytosis; and negative regulation of response to oxidative stress. Is integral component of membrane.

NR:

description
PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034299372.1 True 1361 mRNA 0.50 2 7410907 7412377

Neighbor

gene id symbol gene type direction distance location
mctp1a mctp1,LOC107756292,LOC107703246,LOC107720291 coding downstream 36502 7268166 ~ 7374405 (-)
kiaa0825 kiaa0825 coding downstream 184223 7106152 ~ 7226684 (-)
fam172a fam172a,LOC107756291 coding downstream 306048 6937285 ~ 7104859 (-)
LOC113537041 LOC108255977 coding downstream 857023 6537239 ~ 6553884 (-)
LOC113537042 LOC108255977 coding downstream 873622 6534776 ~ 6537285 (-)
ttc37 ttc37,LOC107735852 coding upstream 16940 7429317 ~ 7454498 (-)
hmgcra hmgcr,hmgcra,LOC107699716,LOC107587518,LOC107720287 coding upstream 97540 7509917 ~ 7518413 (-)
snapc4 NA coding upstream 195407 7607784 ~ 7620562 (-)
entr1 sdccag3 coding upstream 208972 7621349 ~ 7627854 (-)
otpb otpb,otp,LOC108255424,LOC108423578,LOC107587559,LOC107720233,LOC107555478 coding upstream 386832 7799209 ~ 7802780 (-)
G351033 NA non-coding downstream 209355 7200746 ~ 7201552 (-)
G350906 NA non-coding downstream 322871 7087714 ~ 7088036 (-)
LOC113537000 NA non-coding downstream 496564 6902293 ~ 6914343 (-)
G350714 NA non-coding downstream 668305 6742393 ~ 6742602 (-)
G350664 NA non-coding downstream 715844 6694855 ~ 6695063 (-)
G351266 NA non-coding upstream 54219 7466596 ~ 7466953 (-)
G351308 NA non-coding upstream 125661 7538038 ~ 7538341 (-)
G351362 NA non-coding upstream 136209 7548586 ~ 7642268 (-)
G351384 NA non-coding upstream 222725 7635102 ~ 7636193 (-)
G351517 NA non-coding upstream 368403 7780780 ~ 7781553 (-)
G350867 NA other downstream 635758 6764914 ~ 6775149 (-)
LOC113542569 NA other downstream 1058535 6346663 ~ 6352372 (-)
pappab LOC108255326,LOC108423596 other downstream 1289948 6056981 ~ 6120959 (-)
LOC117595919 NA other downstream 1831926 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 1887626 5362282 ~ 5523281 (-)
ccdc180 ccdc180 other upstream 173095 7585472 ~ 7597962 (-)
card9 card9 other upstream 190530 7602907 ~ 7607466 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other upstream 1141270 8553647 ~ 8556676 (-)
malt1 malt1 other upstream 1158140 8570517 ~ 8586011 (-)
sh2d3cb sh2d3c other upstream 1228565 8640942 ~ 8654612 (-)

Expression


Co-expression Network