LOC117595899


Basic Information

Item Value
gene id LOC117595899
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5707923 ~ 5710474 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577085.1
ATATCTCTGTGGCACGCGGAGTAAAAGTGATCTGTGCACCTGTAGAGCCAGGGGCGGGCACTGTTCAGAGAGCACAGAACTGGGCCAATCAGAGGAGCTCGTTTGGGCGCCTGTCTCAcggcgaaaaaaaaaacaactccagACAGCTTCGTCTTGCCGAGCTGGTACCTGATGTTtaagAAAAATGACAGATCAGAGTGGGGCTTTGCAGGTCTGTTTTATGAAAAACggataaattattaaatgaggTGCTCTACTGGATTGAGATGTGGAGACTGTGCAGTCCATCCAGCTCCTGTGAACACAGAAACCCCAGGAGCAGAGAGCCTGTCCAGCCCATGAGCAGCACTTCACTCTCTTCCCAAATCAGCCCAAAACAACCCCTTCCAGATAGTTCCCTTATGCAGGCTGCCTCAGTCAATCACCCTAACCCTGCCCATCAGCTCAGCAACAGCACTGCAGAACTCACATGACTGGAAAAACAAGCACCAATACACTGCAGCCCACGGATTTAAACACTTATCCGTTCTGCATTGTCATCTGTGAGCAAAAAAACAGCATCTGAGCCTCGGAGCAGCAGATTCAAGCAGCTGTAGTTAGTGACTTGTGTTTGTGCTAGAAAAATGTCCAAGAAATGGATTTGTGTACCTGCAGTGAAAAATTTGAGAAGGTGTGAATGTTGTGTTTGTGGGAGAGAAACAAAATTCTACAAGTTTGCAACTCTTAAAGCATTTTTCCCTGTGACTTCAAATTTTCTGATACACGTGTGACTAATTCCACTGTCCCAGGTGCTCAGCGGTTTTGCTCCAATAATACCTTCATATGCAAACTCATCAGGGGTGAACAAGGGGGTTCAGGGACAGCCCTCCTCAGTCTTTATGTGATGCACATCTTTATGAGAAGCCAGGAgctttttacttatttattttggacAACTCATAAGGTATGGTtctcatttaaatgtaaaatgtaaatagagctgagttatagttacatttgccAAATAAATAGGTgatgaaatgtgtaaaatattttacaaatgttttgaaACAATAACCTTTACTGTTCAGAGGACattgatatttttcaaaataaaagttaaaataaaatcagtaaaagATAAACTTGCTAAAGTAAAGAGTGCAGCACATTCTAGCGACCATGCATAATACTGTCCATCTTATTTTGGATCAATTCTTTCAACCATCAAGAAgctattgaatttttttttcaaaataaatattcatacaaATTATGCAACAGTTAACCTTCCAAGTAAAGTGTGTAGCATATTTACCAGAAGGTGCACAATAATGTACAAGTTGCTTTGGATCAATACACGCAATTGTTTAGAAGCTACTGAATTCTGTAACAGCAAAAGTTGCCAAAATAAGAAGACTAATATTGCATAATTTTGGAAGTTTTGGAACAATACATTTATCTGTTCAGCaggtattaatttttttttcaataatagaTGTTTAAAAATCACTAAACTAATCATGAGAAGGTGCACAGTAATCTACTTGGATCAACATACTTGTCCATACTTGTCCAAATAGTATTGTAGAATTGTAGAAGGCATGCACTGGTTTTGAGATAGCCTACTGTCTTAATTCTAATTATTTTCAATTGCAAAATTCAGCTCATCAGGGTCTGTGTAGGTGGTAGTGGGGTGGAGTGAGTGCTGTAAGGTGCTGCTGTGGTTCATGTCAATCTGTTCACACTGTTCTTTTCTGTCGCACTTTATCGACGGTCCCTAACGGCCCCGGATCAGGGGCTCTGGAGAATGTAGAAAATGTTCCGCTCGCTCCGGATCGCGATTTGAttaaacatttgaaacattGACTCTCCTTTCGATGACAAATTCAATTCATGTAGTCTAGTCCGGGAACTGAAAGAAACTTTACCGCAGTACCTAGCCAGCTGTTTTCAGTCTGCTGTAAGCTAAATAAAGTACAGTAGCGGGAGGTGATGGTTAAGCGGAGAGGAGAAGCTCAGATCTGGTGCATTAGTGCAGATTCATGAGCCAGTGTGAGGCTTTAGCTAAAATGTAACTGATACCTAAGCAGAACGAAAACACTGGGAACAATGTGCTGGCCAAATGCGTCATGGTGAAGTCCTCGTGACTGCGCTCGTACTGTACCTTGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577085.1 True 2153 lncRNA 0.41 3 5707923 5710474

Neighbor

gene id symbol gene type direction distance location
LOC113542489 LOC108255707 coding downstream 175608 5524146 ~ 5532315 (-)
LOC117595987 NA coding downstream 474106 5232083 ~ 5233817 (-)
kmt5ab LOC108256031 coding downstream 606429 5084057 ~ 5101494 (-)
mob1a LOC108255806,LOC107087288,LOC107739988,LOC101073635,LOC102234237,LOC107675956,LOC101160416,LOC107702973,LOC103470272 coding downstream 691508 5007202 ~ 5016415 (-)
dguok LOC108256054,LOC108438482 coding downstream 703548 5000023 ~ 5004375 (-)
cntrl cntrl coding upstream 80936 5791410 ~ 5838534 (-)
c5 c5 coding upstream 130027 5840501 ~ 5865005 (-)
prdm12b prdm12b,prdm12,LOC108255448,LOC108423597,LOC103042983,LOC107688643,LOC107731029,LOC107665021 coding upstream 155364 5865838 ~ 5870388 (-)
surf4l surf4l,LOC100304967,LOC108423697,LOC107595501,LOC107740812,LOC107688631,LOC103043297,LOC107665048 coding upstream 218677 5929151 ~ 5938345 (-)
ciz1b LOC108256061 coding upstream 232828 5943302 ~ 5953387 (-)
G350090 NA non-coding downstream 17154 5690361 ~ 5690769 (-)
G350061 NA non-coding downstream 47608 5660100 ~ 5660315 (-)
G350058 NA non-coding downstream 62851 5642441 ~ 5645072 (-)
G350057 NA non-coding downstream 65506 5641885 ~ 5642417 (-)
G349960 NA non-coding downstream 189632 5517872 ~ 5518291 (-)
G350114 NA non-coding upstream 19988 5730462 ~ 5730720 (-)
LOC117595975 NA non-coding upstream 227992 5938466 ~ 5941832 (-)
G350513 NA non-coding upstream 598658 6309132 ~ 6310450 (-)
LOC117595904 NA non-coding upstream 672630 6383104 ~ 6388571 (-)
G350664 NA non-coding upstream 984381 6694855 ~ 6695063 (-)
LOC117595919 NA other downstream 128942 5575788 ~ 5578981 (-)
LOC113542328 hectd4 other downstream 184642 5362282 ~ 5523281 (-)
G349951 NA other downstream 343641 5321513 ~ 5364282 (-)
hip1rb hip1r,LOC108255864 other downstream 380371 5248648 ~ 5327552 (-)
G349584 ung other downstream 1168092 4539283 ~ 4539831 (-)
pappab LOC108255326,LOC108423596 other upstream 346507 6056981 ~ 6120959 (-)
LOC113542569 NA other upstream 636189 6346663 ~ 6352372 (-)
G350867 NA other upstream 1054440 6764914 ~ 6775149 (-)
ccdc180 ccdc180 other upstream 1874998 7585472 ~ 7597962 (-)
card9 card9 other upstream 1892433 7602907 ~ 7607466 (-)

Expression


Co-expression Network