LOC117595902 (LOC108255364)


Basic Information

Item Value
gene id LOC117595902
gene name LOC108255364
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3682580 ~ 3685306 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577092.1
ACTGAAACGAGCAGCTTTTCCACTTCTTCTCTCGTGTTTTTGCCTACCAGACTTGAGGACTATCTACATTTTGCAAACAGaccagtacacacacacacacacacacacatacacacacatacacacagagttcaATATGCATTTAAACTCCAGAGCAGAGAACGTCACACTGTCACTGAACTTCATGGGGAGGAAGTTACGAAATCACGCAGTGGCCCCAGCTGCTAAGCAACGGGCATGGGAGAGAACTGGGCCGTCCAAGTGTGCTGATGAGAACAGAGGTGGTCTGTCCACAGTGGTGAGAGCACAGccactggtgtgtgtgcagaacGAGTTGCCAGGAAGCATACAGGACCTGAGGGAGGAAATGCAACGTCAGGCCTGTAATGTCCATAACACACACCTTGACCAGGAGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577092.1 True 419 lncRNA 0.49 3 3682580 3685306

Neighbor

gene id symbol gene type direction distance location
LOC113542282 si:dkey-96l17.6,LOC108255364,LOC108434467 coding downstream 8724 3664972 ~ 3673856 (-)
abhd17b abhd17b,LOC103022021,LOC107599913,LOC107592319,LOC107672759 coding downstream 113805 3552519 ~ 3568775 (-)
cemip2 tmem2 coding downstream 136100 3511115 ~ 3546480 (-)
klf9 klf9 coding downstream 369724 3307168 ~ 3312856 (-)
araf araf,LOC108255753 coding downstream 439739 3229104 ~ 3242841 (-)
wu:fa19b12 NA coding upstream 189576 3874882 ~ 3879761 (-)
LOC113542542 LOC108255316,LOC108255814,LOC108255815,LOC108262011 coding upstream 305601 3990907 ~ 3993684 (-)
LOC113542541 LOC108255813,LOC108255349 coding upstream 308440 3993746 ~ 3997416 (-)
LOC113542443 NA coding upstream 345127 4030433 ~ 4032187 (-)
sart3 sart3 coding upstream 378959 4064265 ~ 4084764 (-)
G348909 NA non-coding downstream 65999 3615071 ~ 3616581 (-)
LOC117595903 NA non-coding downstream 75204 3561666 ~ 3607376 (-)
G348906 NA non-coding downstream 130908 3550577 ~ 3551672 (-)
G348695 NA non-coding downstream 366636 3315374 ~ 3315944 (-)
G348681 NA non-coding downstream 417758 3262269 ~ 3264822 (-)
G349325 anxa1,LOC108255810,LOC108255809,LOC100335033,LOC108438700,LOC108434481 non-coding upstream 10172 3695478 ~ 3697524 (-)
G349333 NA non-coding upstream 32933 3718239 ~ 3722019 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding upstream 778868 4464174 ~ 4512012 (-)
G349655 NA non-coding upstream 1018087 4703393 ~ 4704166 (-)
G349642 NA non-coding upstream 1091724 4777030 ~ 4786024 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 294850 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 516326 3156042 ~ 3166254 (-)
unc5db unc5d,LOC108434269 other downstream 717691 2811544 ~ 2964889 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other downstream 850901 2773722 ~ 2831679 (-)
trpm6 LOC108255945,LOC108438703 other upstream 146779 3832085 ~ 3879948 (-)
carnmt1 carnmt1 other upstream 196710 3882016 ~ 4204104 (-)
G349584 ung other upstream 853977 4539283 ~ 4539831 (-)
hip1rb hip1r,LOC108255864 other upstream 1563342 5248648 ~ 5327552 (-)
G349951 NA other upstream 1636207 5321513 ~ 5364282 (-)

Expression


Co-expression Network