LOC117595908


Basic Information

Item Value
gene id LOC117595908
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5055342 ~ 5060388 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577095.1
TGGAACTTTACATGCTTTATTAAATGAAACTTAATGAGTGAGTTAATATATATGCCGAGGTTAAACAAGGCAGCGACTTTTTGATGACCCGGAAGtaatctcttaaaaaaaaaaaaaaaaaaaaaaagttgcaaatCTGATGCAGTGAAACTAAAAGCTAAACCTCAGGTGTGCCACTGCTTGGCTATGAGTGGAATGGACTCATTGCACAAACACGTCTGCGTTCTTCTGAGTACTGCCCCAGCGTTTCCGGTTCTTTCACTACACTCGCAATGTGGAGACTGTCTTCCGATCCCTTGAACCTCTTGAAAACCACTGTTTTTTGAAGAAGCTGATGATGGCACGCAGTACACTAGGGAGTGTACTGCTCATTCCACACTGAGACACACCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577095.1 True 392 lncRNA 0.42 3 5055342 5060388

Neighbor

gene id symbol gene type direction distance location
mob1a LOC108255806,LOC107087288,LOC107739988,LOC101073635,LOC102234237,LOC107675956,LOC101160416,LOC107702973,LOC103470272 coding downstream 38927 5007202 ~ 5016415 (-)
dguok LOC108256054,LOC108438482 coding downstream 50967 5000023 ~ 5004375 (-)
ebf2 LOC108255422,LOC108438472,LOC105027009,LOC100704273,LOC102791852 coding downstream 81244 4947952 ~ 4974098 (-)
ank1a LOC108255531,LOC108438466,LOC107722748,LOC107702961 coding downstream 124489 4825963 ~ 4930853 (-)
sftpbb LOC108255529 coding downstream 240093 4807450 ~ 4815249 (-)
kmt5ab LOC108256031 coding upstream 23669 5084057 ~ 5101494 (-)
LOC117595987 NA coding upstream 171695 5232083 ~ 5233817 (-)
LOC113542489 LOC108255707 coding upstream 463758 5524146 ~ 5532315 (-)
cntrl cntrl coding upstream 731022 5791410 ~ 5838534 (-)
c5 c5 coding upstream 780113 5840501 ~ 5865005 (-)
G349812 NA non-coding downstream 36667 5018106 ~ 5018675 (-)
G349805 NA non-coding downstream 48693 5006276 ~ 5006649 (-)
G349642 NA non-coding downstream 269318 4777030 ~ 4786024 (-)
G349655 NA non-coding downstream 351176 4703393 ~ 4704166 (-)
G349547 tmed2,LOC105026094,LOC105904311 non-coding downstream 543330 4464174 ~ 4512012 (-)
G349823 NA non-coding upstream 5389 5065777 ~ 5066161 (-)
G349830 NA non-coding upstream 42340 5102728 ~ 5102953 (-)
G349832 NA non-coding upstream 43642 5104030 ~ 5104290 (-)
G349833 NA non-coding upstream 48667 5109055 ~ 5110303 (-)
G349811 NA non-coding upstream 55428 5115816 ~ 5126817 (-)
G349584 ung other downstream 515511 4539283 ~ 4539831 (-)
carnmt1 carnmt1 other downstream 851238 3882016 ~ 4204104 (-)
trpm6 LOC108255945,LOC108438703 other downstream 1175394 3832085 ~ 3879948 (-)
trpm3 trpm3,LOC108434489,LOC108255677,LOC107595026,LOC107673407,LOC107672763,LOC106928040,LOC106941846 other downstream 1667612 3319785 ~ 3387730 (-)
tm2d2 tm2d2 other downstream 1889088 3156042 ~ 3166254 (-)
hip1rb hip1r,LOC108255864 other upstream 188260 5248648 ~ 5327552 (-)
G349951 NA other upstream 261125 5321513 ~ 5364282 (-)
LOC113542328 hectd4 other upstream 301894 5362282 ~ 5523281 (-)
LOC117595919 NA other upstream 515400 5575788 ~ 5578981 (-)
pappab LOC108255326,LOC108423596 other upstream 996593 6056981 ~ 6120959 (-)

Expression


Co-expression Network