LOC117595926


Basic Information

Item Value
gene id LOC117595926
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2242208 ~ 2242816 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577113.1
cacacacacacacacacatgctgaactTCGTGAACCTACTGTACTCCTGACATCAATAGAGTTTGGACAGATGCTGATTATCTTCATCTGAGGAGAGCAGGATGAGGTGGAGGACCTTCACCAGcaCTTGATTAAATAAGAACGAGGTGATGGCTTCAGCCTGCAGACGACCCACTGGACATGACAGATGAAATTGGCTCTTGTTGACACAGGAATAATGAAGAAGACTGTAGAGAAGCTGGTAGTGATCCTAATATGGAACTACTCTATGATTTTCCATCATAAAACAGCTGGTTCTGAAGCGAGAAAAATGGCTCGGATCGAGCACTATAATTATTTCTGGCCTGGAACCAAGTGCCAGTGATGTCATGGGCTTGGAGGTGATGTCATTTCATCTCCATGCCAACCTCCTCGACCTCCATGACCACAGACATGTTCCATGAAATCCATTAAGAGATGCACCAAGATATGAACACTACTGGGGGCTActgttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577113.1 True 495 lncRNA 0.45 2 2242208 2242816

Neighbor

gene id symbol gene type direction distance location
ncaph ncaph,LOC107709847 coding downstream 32467 2201716 ~ 2209741 (-)
vamp8 vamp8,LOC107728749,LOC107656490,LOC107587315,LOC107594988,LOC103036711 coding downstream 42657 2191585 ~ 2199551 (-)
LOC113542514 NA coding downstream 64149 2169335 ~ 2178059 (-)
LOC113542577 NA coding downstream 75826 2164473 ~ 2166382 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding downstream 78288 2156986 ~ 2163920 (-)
tacr1a LOC108255984,LOC108434514,LOC102799894,LOC102196095,LOC102292930 coding upstream 10165 2252981 ~ 2282993 (-)
ogfod2 ogfod2 coding upstream 114455 2357271 ~ 2363155 (-)
LOC113542614 LOC108255713 coding upstream 192508 2435324 ~ 2458405 (-)
LOC113542490 NA coding upstream 222756 2465572 ~ 2482183 (-)
sfrp1a sfrp1 coding upstream 458181 2700997 ~ 2712386 (-)
G348180 NA non-coding downstream 60348 2111663 ~ 2181860 (-)
G348200 NA non-coding downstream 100106 2141616 ~ 2142102 (-)
G348147 NA non-coding downstream 208344 2033557 ~ 2033864 (-)
G348143 NA non-coding downstream 255161 1986183 ~ 1987047 (-)
G348103 NA non-coding downstream 299497 1805996 ~ 1942711 (-)
G348233 NA non-coding upstream 63309 2306125 ~ 2308604 (-)
G348264 NA non-coding upstream 158041 2400857 ~ 2401493 (-)
G348283 NA non-coding upstream 180899 2423715 ~ 2424331 (-)
G348309 NA non-coding upstream 302599 2545415 ~ 2546515 (-)
G348310 NA non-coding upstream 303756 2546572 ~ 2548040 (-)
LOC113542580 NA other downstream 10641 2179539 ~ 2231567 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other downstream 114563 1982054 ~ 2127645 (-)
G348145 NA other downstream 243738 1995902 ~ 1998470 (-)
G348096 LOC108255538 other downstream 413563 1827898 ~ 1828645 (-)
LOC117595719 NA other downstream 531300 1450335 ~ 1710908 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 358718 2601534 ~ 2664482 (-)
LOC113542231 LOC108255681,LOC107659283,LOC107721542,LOC108434264,LOC107587464,LOC107709859 other upstream 530906 2773722 ~ 2831679 (-)
G348491 LOC108255682,LOC108434266,LOC108419634,LOC108415785,LOC108417841,LOC107715185,LOC107690133,LOC107745493 other upstream 541861 2784677 ~ 2785896 (-)
unc5db unc5d,LOC108434269 other upstream 568728 2811544 ~ 2964889 (-)
tm2d2 tm2d2 other upstream 913226 3156042 ~ 3166254 (-)

Expression


Co-expression Network