LOC113524984


Basic Information

Item Value
gene id LOC113524984
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1338808 ~ 1339841 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577144.1
TCTGTTTTCCCTCTATGGGCATTTTATTTGAAGAAATTGTCATTGGCTGTATAAGTAACCACACCGCCTACACACAGATAAACCAGTGTTTGAGTGAAATGTTGcttcttctttgtctctctctgataCACAGTGGTTTGGTTTGAAGCTCTGCATGTGTTTCTCCTTGTCATGGTGTTGCTGCTTTACCCAGATGCTGCCTTCTTCAAATTAAGACTAGAAATCAAGAGACTAATATTCTCTAAGAAGAAAACCAAGAGGAGACATg

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04640 Hematopoietic cell lineage

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577144.1 True 268 lncRNA 0.40 3 1338808 1339841

Neighbor

gene id symbol gene type direction distance location
LOC113528146 NA coding downstream 22421 1314499 ~ 1316387 (-)
LOC117595981 NA coding downstream 41000 1293874 ~ 1297808 (-)
LOC117595953 mvk coding downstream 80866 1251870 ~ 1257942 (-)
LOC117595980 NA coding downstream 98759 1236871 ~ 1240049 (-)
tchp tchp coding downstream 108160 1188924 ~ 1230648 (-)
LOC113524983 NA coding upstream 10475 1350316 ~ 1420706 (-)
LOC113524989 NA coding upstream 85258 1425099 ~ 1431481 (-)
LOC113528310 NA coding upstream 93165 1433006 ~ 1442192 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 195754 1535595 ~ 1558524 (-)
fam151b fam151b coding upstream 546811 1886652 ~ 1892126 (-)
G348001 NA non-coding downstream 3871 1227126 ~ 1334937 (-)
LOC117595965 NA non-coding downstream 27314 1309689 ~ 1311494 (-)
LOC117595969 NA non-coding downstream 53813 1264805 ~ 1284995 (-)
G347969 NA non-coding downstream 61595 1095034 ~ 1277213 (-)
G348003 NA non-coding downstream 106967 1231235 ~ 1231841 (-)
G348011 NA non-coding upstream 62015 1401856 ~ 1402831 (-)
G348012 NA non-coding upstream 69120 1408961 ~ 1463632 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 156569 1496410 ~ 1496871 (-)
LOC117595968 NA non-coding upstream 242879 1582720 ~ 1605702 (-)
trnak-uuu_19 NA non-coding upstream 258629 1598470 ~ 1598542 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 59941 1268309 ~ 1278867 (-)
G347960 NA other downstream 259669 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 414141 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 872553 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 971069 364006 ~ 367739 (-)
LOC113524988 NA other upstream 16727 1356568 ~ 1369462 (-)
LOC117595719 NA other upstream 110494 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 165798 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 488057 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 642213 1982054 ~ 2127645 (-)

Expression


Co-expression Network