LOC117595965


Basic Information

Item Value
gene id LOC117595965
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1309689 ~ 1311494 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577145.1
CTGCTCAGCAACTGATGACGTCTTTAATCCtgaatcctgattgTTTGCGCTGAGAGATGGACCACATCTGTGTTATCATAAAGCTCTCTGGCTTTTCTCacattgtgtttcatttttcatcaccaGAGTGAATATGGACTGAAAGCATCACTGGAGCAGTCGTGGCTGTTATTTCCCTCACTGTCTCTACTGCTGGATTTCTCATCTGGAGGAAGAAGAAGTCTGcttaatgaattattaatgaaagatTACAACTGAACAGAAATCTGAGATTGAGATCCTGTGCTGTGATGGTGGGTCAGTTTTAATTTCTACTCAGaattcactttcacttttattgTGTAATGTTTAGTCCACTTTTTCAGGCTACTTTAAATGGTTTAGAGTCTCTGAATATTCTGCTTCCCCAAGacttaaagtttaaaatgtccTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577145.1 True 436 lncRNA 0.39 4 1309689 1311494

Neighbor

gene id symbol gene type direction distance location
LOC117595981 NA coding downstream 11881 1293874 ~ 1297808 (-)
LOC117595953 mvk coding downstream 51747 1251870 ~ 1257942 (-)
LOC117595980 NA coding downstream 69640 1236871 ~ 1240049 (-)
tchp tchp coding downstream 79041 1188924 ~ 1230648 (-)
LOC117595672 mmab coding downstream 201041 1086342 ~ 1108648 (-)
LOC113528146 NA coding upstream 3005 1314499 ~ 1316387 (-)
LOC113524983 NA coding upstream 38822 1350316 ~ 1420706 (-)
LOC113524989 NA coding upstream 113605 1425099 ~ 1431481 (-)
LOC113528310 NA coding upstream 121512 1433006 ~ 1442192 (-)
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding upstream 224101 1535595 ~ 1558524 (-)
LOC117595969 NA non-coding downstream 24694 1264805 ~ 1284995 (-)
G347969 NA non-coding downstream 32476 1095034 ~ 1277213 (-)
G348003 NA non-coding downstream 77848 1231235 ~ 1231841 (-)
G347980 fam222a non-coding downstream 132519 1174117 ~ 1177170 (-)
G347963 NA non-coding downstream 206805 1083752 ~ 1102884 (-)
LOC113524984 NA non-coding upstream 27314 1338808 ~ 1339841 (-)
G348011 NA non-coding upstream 90362 1401856 ~ 1402831 (-)
G348012 NA non-coding upstream 97467 1408961 ~ 1463632 (-)
G347916 LOC108255589,LOC108255412 non-coding upstream 184916 1496410 ~ 1496871 (-)
LOC117595968 NA non-coding upstream 271226 1582720 ~ 1605702 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 30822 1268309 ~ 1278867 (-)
G347960 NA other downstream 230550 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 385022 856780 ~ 924667 (-)
rusc2 rusc2,LOC108255549 other downstream 843434 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 941950 364006 ~ 367739 (-)
LOC113524988 NA other upstream 45074 1356568 ~ 1369462 (-)
LOC117595719 NA other upstream 138841 1450335 ~ 1710908 (-)
LOC113542373 NA other upstream 194145 1505639 ~ 1530394 (-)
G348096 LOC108255538 other upstream 516404 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 670560 1982054 ~ 2127645 (-)

Expression


Co-expression Network