LOC117595968


Basic Information

Item Value
gene id LOC117595968
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1582720 ~ 1605702 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577149.1
ACCTGTGTATAAAGTAAAACAGCAAATTAGTGCTATTTAAATTTActcttttaaaaaagttttgcaTTGAAGTTACAAGGCGAATGGAAGCTTGTGAGCACCAATAATGTGGTTATTATGCTAACCACATGAATTAATTACCACACCCCagcaatattattttaaaatgattacattttgaaatacaatttttaagAACAGAAACATGGAAGTGAAGTCAAGTCAAACGATTCTggattcaaaatggctgccagcAGAGTTTACATGGACATTTGCTCATTATAGATGAGTAAAAGGTATGATGGTGGCAAATTCTGTGCCAAAAATCTGAGtgcaaatcatttttctttttgccagcagtgggaaaaaaactcaaatgTCCTCAACCTCAGACCTCAAAACTCAAATATCATTGCCTAATTCATTTTTCCGGAAATCAGTGCTGACTGGCTGCGTGCCACTGTGACGCACCATTGGCGGAGTTACCTGTTCTTCATCAGAGGCATGActtcatcaacacacactcttcatGTCCTGAACTGATAAAAGGCAGAGGGCAGATGTGAATTTGCTGCCCTAAACTTGGACTCAAACAGCACCACTGGAGCATACAGACTAGCAGAAACACAGTTAAGGCCACACTGTAAACGATCTCCTACAGAGCCGTTCATCAGCTGATTGGGCGTCCACTTCAGCGCCATGGTGTCGGCGGTCTGGTGCAGAGACAGGTATCCTGGGATCGCCTCCATGTCGTCTCTCTACATGAACAACAACAAGCTGCCATGTCAAGAAACGCCAACATTTTCAAGTAGCAAAAGATCTAAAGATGTATAAAGCCAACAAATAGCATTCTTGCTAATGTTAATGCTTCACTGCACTAAAAAAACATAGACATCACCTTTACTTTtccattattaatcattttgtgTGTGACGGGGGGATAGAGACCTTCTGACAGATGGTTCAGCTTACATAATAGATATgatgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577149.1 True 989 lncRNA 0.40 3 1582720 1605702

Neighbor

gene id symbol gene type direction distance location
slc6a4b slc6a4b,LOC108255560,LOC108434249,LOC107595929,LOC107672619,LOC107654599,LOC107597334,LOC105014447 coding downstream 24196 1535595 ~ 1558524 (-)
LOC113528310 NA coding downstream 140528 1433006 ~ 1442192 (-)
LOC113524989 NA coding downstream 151239 1425099 ~ 1431481 (-)
LOC113524983 NA coding downstream 162014 1350316 ~ 1420706 (-)
LOC113528146 NA coding downstream 266333 1314499 ~ 1316387 (-)
fam151b fam151b coding upstream 280950 1886652 ~ 1892126 (-)
ccdc125 ccdc125 coding upstream 286566 1892268 ~ 1900064 (-)
rad17 rad17 coding upstream 295457 1901159 ~ 1907573 (-)
erap1b LOC108255537,LOC108255538,LOC108434503,LOC108434502,LOC107752503,LOC108434504 coding upstream 345927 1951629 ~ 1968139 (-)
rnf181 rnf181,LOC107595010,LOC107750183,LOC107672715,LOC107592411 coding upstream 551284 2156986 ~ 2163920 (-)
G347916 LOC108255589,LOC108255412 non-coding downstream 85849 1496410 ~ 1496871 (-)
G347959 NA non-coding downstream 118239 1069718 ~ 1464481 (-)
G348012 NA non-coding downstream 119088 1408961 ~ 1463632 (-)
G348011 NA non-coding downstream 179889 1401856 ~ 1402831 (-)
LOC113524984 NA non-coding downstream 242879 1338808 ~ 1339841 (-)
G347901 LOC108255434,LOC108255614,LOC108255575,LOC108255567 non-coding upstream 26489 1632191 ~ 1638134 (-)
G348067 NA non-coding upstream 87441 1693143 ~ 1795534 (-)
G348079 NA non-coding upstream 128204 1733906 ~ 1859612 (-)
G347900 LOC108255575,LOC108255576,LOC108255573,LOC108255614 non-coding upstream 129211 1734913 ~ 1742300 (-)
G347905 LOC108255614,LOC108255436,LOC108255578,LOC108255576,LOC108255573 non-coding upstream 157509 1763211 ~ 1766929 (-)
LOC113542373 NA other downstream 52326 1505639 ~ 1530394 (-)
LOC113524988 NA other downstream 213258 1356568 ~ 1369462 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other downstream 303853 1268309 ~ 1278867 (-)
G347960 NA other downstream 503581 1076733 ~ 1079139 (-)
LOC113527995 LOC108255428 other downstream 658053 856780 ~ 924667 (-)
G348096 LOC108255538 other upstream 222196 1827898 ~ 1828645 (-)
arvcfb arvcf,arvcfb,LOC107673389,LOC107595013 other upstream 376352 1982054 ~ 2127645 (-)
G348145 NA other upstream 390200 1995902 ~ 1998470 (-)
LOC113542580 NA other upstream 573837 2179539 ~ 2231567 (-)
zmat4a zmat4,LOC108434259,LOC107594996,LOC106580521 other upstream 995832 2601534 ~ 2664482 (-)

Expression


Co-expression Network