LOC117595977



Basic Information


Item Value
gene id LOC117595977
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 9603400 ~ 9606974 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XR_004577161.1
GAATCATAGGCAATGGAGTGAAATTTCAGGagaatgttatttaaaaaagttttggaCACTTAAGCTACAACTTAGTTGGAAGAAGATCTTCCTGAGAACAACCACTAAAATACACCACGTTTTAGTGTCTTGGGAATTTTCTGACCACAAACACCATCAGCCTGCAAAAAAGAGAACTTCATGCAAGGAACAGACCAAAAACTCGCAGTAAAATACAATGGTGAATCACTGCgaaaaatagttcccaaagaaacCACATCTGGATGAAGTGTTgcgtgttgccatgccaacacacagactgactaACAGCctatatgcattatggCGCTTGGTCAGTAAAGAACAGCAACTTCTAGAAGAGGCCTGTGGCTTTTCTCCAGCCTTCTATATCCTGCACACTTGAGGAGCGGAGGTAGAACACACTCGCTCCAGGAGCTGATGAGTGAAAATTAGAGGAACACGTGTTAATACGCATGTTTCCCCTGCTCCCAGAGAGATTTCGAGGTTATTTGAGAGATATTAAAAGCAATGGAGCACTGCCAGGAAAAACTGGGAGTGGAATGCAAAGCCACAAAGCGTTCACACAGATCAGCATTTATAGGTAAAGTACACATTCATCGCGCTTGAATATTGTTATTTTGGAGGGCAGGACATTTTTGtacatataatacattttgcaaGTTCATATGATTATAAGTATTGCCTATATAAAGTACAAAGCTTCaaaaatatagtatattttaagtgttttttaaacTGTCTGCTAAtaaaattagtgtttttttaagtCTTATATTGATCTTTTAGAGTTCGTTTCATG

Function


GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA


RNA id representative length rna type GC content exon number start site end site
XR_004577161.1 True 820 lncRNA 0.38 3 9603400 9606974
Loading

Neighbor


gene id symbol gene type direction distance location
polr3g polr3g,LOC107557435 coding downstream 230781 9369976 ~ 9372619 (-)
adgrv1 adgrv1 coding downstream 242519 9229961 ~ 9360881 (-)
pmpca pmpca coding downstream 426938 9169861 ~ 9176462 (-)
coq2 coq2 coding downstream 448711 9148049 ~ 9154689 (-)
mboat4 mboat4 coding downstream 474936 9127011 ~ 9128464 (-)
LOC113536918 LOC108255830 coding upstream 119421 9726395 ~ 9728449 (-)
rasa1a rasa1,LOC108443998,LOC106580138 coding upstream 132037 9739011 ~ 9767469 (-)
vcana vcan coding upstream 630662 10237636 ~ 10269049 (-)
zgc:110626 LOC108255345 coding upstream 726452 10333426 ~ 10339194 (-)
f2r f2r coding upstream 760421 10367395 ~ 10369658 (-)
G352512 NA non-coding downstream 270429 9332766 ~ 9332971 (-)
G352487 NA non-coding downstream 392870 9206428 ~ 9210530 (-)
G352498 LOC108255998 non-coding downstream 402712 9196783 ~ 9200688 (-)
G352491 NA non-coding downstream 418646 9182148 ~ 9184754 (-)
LOC113536901 NA non-coding downstream 626512 8971632 ~ 8976888 (-)
G352610 NA non-coding upstream 74055 9681029 ~ 9681798 (-)
G352869 NA non-coding upstream 542283 10149257 ~ 10225339 (-)
G352878 NA non-coding upstream 629910 10236884 ~ 10237277 (-)
G352881 NA non-coding upstream 702311 10309285 ~ 10309632 (-)
G352883 NA non-coding upstream 705613 10312587 ~ 10313356 (-)
LOC113536894 ttc16 other downstream 553992 9040627 ~ 9049408 (-)
sh2d3cb sh2d3c other downstream 948788 8640942 ~ 8654612 (-)
malt1 malt1 other downstream 1017389 8570517 ~ 8586011 (-)
hint2 hint2,LOC102299676,LOC102195764,LOC102781852,LOC104963271 other downstream 1046724 8553647 ~ 8556676 (-)
card9 card9 other downstream 1995934 7602907 ~ 7607466 (-)
LOC113536891 NA other upstream 168992 9775966 ~ 9814416 (-)
iqgap2 iqgap2,LOC107748460,LOC107565681,LOC107700055,LOC107561620,LOC107685248 other upstream 763188 10370162 ~ 10411686 (-)
LOC113536921 LOC108255872 other upstream 902097 10509071 ~ 10517205 (-)
LOC113536823 NA other upstream 1124553 10731527 ~ 10748838 (-)
mrpl41 mrpl41 other upstream 4115131 13722105 ~ 13724858 (-)

Expression


LOC117595977 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC117595977 Expression in each Bioproject

Bar chart with 3 bars.
LOC117595977 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
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Co-expression Network