G368903


Basic Information

Item Value
gene id G368903
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 578593 ~ 581860 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437043
CGGTGAGATTTATTTCCCAACTAGAAGAAATCTCCTTTGCTGCTTTTGCATATTGTTACAAAACAGAACTTTACTTCAtgtaactgaaataataaataaatccagagTAATGTTTACACCAGTCATTTACAGCCATCTTTCATTTCCATACGTAGAACACAATGACAAAAGTAacacattttagtttttcttttcttgttatttAAAGCCGTTGAATCTTAACTTGATCAAACCTTACAAACCTGATGGTGTGAGTATGTTGGATCAGGATACAGTAGACTGACAtggtgtgtgtaaaaaaaaaaaaaaaaaaaaaatctttacacgctattaaaatttaaaactcGACTTAGTGTTGTTTATCATGTTTTCAGTAACACACCTTGTAACATGCTTGTAAAAAAATTTCATAGctgtataaaatctaaaatactGAGCGATTTGAAAATCTGCAACAGTAGCACATggttttctttgtaaaataaagaTCCAAGGTGTTTAAGAATACGTTAATCAACACCGCCGTATTAAAACTGCGTACGTGGCTGTTGCGTATGAAAGCTCGAAGCTAATGTCCTCTCTCAAAGAGAATGTTTAGTGTCTGTGTGATAACCACAGTTCATGATTTCATCACCAAAATACAGCAATAAATCTTCATGCCACTTCATTTACGCTGCTCACACACTGCGCCTCATTAATCGctcttttaataaaatgatttagtgGCCAAATGGACGTAAACATTCCaaccagatttacaaaaacGCTCACGATCTGACACCAACTTGTAGGAGATGAACGTTTTTCCCCAACTGACTACATTTTCATGAAGTGTGTAAACGCTCTTGAGAACGATTTACGAATGAATTCGTTTcttatccagtttgataaactgtttgcattaaaaaaagctcTAGTAACGAATAGCTAGTGGAGTTCACGGTAATGCAGCgattaaaacaaacaagctgcgtcttttaaaaatcaaatctaTTTTCTTGATTTCCCGTTAGGGATTTAGGGTTTAAAACCTCAGAGGGACGTTTCCATGACGATGACGGTTAAGGAACAGCGCATGTCGTCCTCCGAGCGCTCTACTTAAACAACACCAGCAGCTCAAGCTACTCACTGTGCACTTCATAGCTCATTAAAGCTTAATGATGTTTAACGTCAAACAAGACCTAATCCACTGCTTAATCCATCTGCTCGAGTCACCGTTCAGAGAATCAGATCTGAGATCTGCTTTTTTAGGACGCTGCTGAGAACAGGATCATCCTcctgaattaaaaaatgtatatatatgctGGCCATTATGGACGATCACATCAGCAGGTCCAGAGGAGACAGCAGCGCTAACATTTCAGCAGCGCTAACATTTCAGCAGCGCTAAAACTTTTGCCTGAAAGTCTTCCGAATCCCAAGACTCACTCAGGACACTCAGTGACTATAAAATCCCTCCATAAAGAATCCTGAATGAATCAACGAATTTGTCCTGCTTCACGTCCTCTTCATCTgcagcagtggtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtgtgtttagttgtgGTAATAGGGGTGGAACGGTCTCTCAGGAGCGCAGAtgctcagtgcagtgtgtgtgtgcagcagtaaCCGCGGAAAGCGCGAGGTGAAATACGCCACAAAGCCTTCTGGGACTTCACCGAGCGCCGCTTGAACCTCAGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437043 True 1714 lncRNA 0.40 4 578593 581860

Neighbor

gene id symbol gene type direction distance location
chtf18 chtf18,LOC107725360 coding downstream 20381 544258 ~ 558212 (-)
uncx4.1 LOC108258667 coding downstream 53528 518604 ~ 525065 (-)
elfn1b elfn1b,LOC108258545,LOC108439159,LOC107722936,LOC107590768,LOC107702506,LOC107714143 coding downstream 170304 352453 ~ 408289 (-)
rgs11 rgs11 coding downstream 300910 262153 ~ 277683 (-)
percc1 LOC108258685 coding downstream 334419 234899 ~ 244174 (-)
plk1 plk1,LOC107722962,LOC107702528 coding upstream 638 582498 ~ 589396 (-)
LOC113535779 cacng3,LOC108258515,LOC108439097 coding upstream 63616 645476 ~ 651428 (-)
tlr2 tlr2 coding upstream 121339 703199 ~ 711315 (-)
fscn1b LOC108258690 coding upstream 315364 897224 ~ 902489 (-)
smcr8b LOC108258855 coding upstream 381995 963855 ~ 969617 (-)
G368725 NA non-coding downstream 296690 281439 ~ 281903 (-)
G368713 NA non-coding downstream 333813 244177 ~ 244780 (-)
G368689 NA non-coding downstream 384679 185834 ~ 193914 (-)
G368685 NA non-coding downstream 393947 179182 ~ 184646 (-)
G368912 NA non-coding upstream 89780 671640 ~ 673030 (-)
G368944 NA non-coding upstream 119224 701084 ~ 701288 (-)
G369130 NA non-coding upstream 289729 871589 ~ 875203 (-)
LOC117596193 NA non-coding upstream 684846 1266706 ~ 1270425 (-)
G369243 LOC108258881,LOC108261507 non-coding upstream 695213 1277073 ~ 1277650 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 288685 284863 ~ 289908 (-)
si:dkeyp-75b4.8 NA other downstream 351491 202654 ~ 227102 (-)
rasd3 LOC108258668 other upstream 9276 591136 ~ 592595 (-)
prkcba prkcb other upstream 71593 653453 ~ 702345 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 287899 869759 ~ 948803 (-)
G369125 actb other upstream 329693 911553 ~ 915683 (-)
G369242 LOC108258881 other upstream 694161 1276021 ~ 1276813 (-)

Expression


Co-expression Network