rasd3 (LOC108258668)


Basic Information

Item Value
gene id rasd3
gene name LOC108258668
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 591136 ~ 592595 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437049
GTCGCCGCGGTGTTCCGAGAGCTGCTCGCGCGAGCCGACCTGCCCAGCCGCGTGAGCCCGGCACTGCGCAGGCGCAGACAGACCTGCGGGAGGGACTGCGGCGATGAGAAAGCCAACATGAGGAAAAACAGCAGCTGCGTTCTGTCTTAATCAAAAACCTCCACCGGTAACCTGCACTAACGCCTCACGCTGACGCACTTCCGGTGGCGCAGAACTCagtctgacctctgacctctgacctttctaCACCACTGACTCTTTATGTGCCAGTGTTACAGAACTGCAGAAAAGTAAATGATGTGTATGTGAAAGAGTAAACATACTTTTATACCTTTCTGAAGTTTCTGCTGGTTTATTTTCAGCATcataaactcctccgtcctgaagaaaCGCACAgctacagcttcacctctgactgttacgaagcgctgacactggagactccttccttacatgttacatccttacagaaatcttcaccacatcagtgatTGTTTTAgttacaggaaatgaatcagtactttctgaccaatcagacatGAGAATTCAGTGTATCTGATACTTACGATGCATATTACAATctttgtacatattttaaaagCCTGTAATTACACACATAACTGTAATTGATATTTTTATCGTATTTACAGCGAGAGAAATCCTTCTGTTCTCGGCGAATAAACCATTCGTGTGTGATGTGAAAGTTGGTGGCGTGGACATTTACGCCAAACTGGAGCAACTACActttatcaaaaatatattagactttaaatctgtgtatctatttctgtatttctctgaactttaattaaagctgttttgtgttcG
>XM_026929185.2
CTCAGCGCACGGCGTGGTGGCGTGATGACGTCATCGTCGCTGTCGGTCCCGGAGCGGCGCACGGCGCGGATCGTGTTCCTGGGCGCCGCGGGTGTGGGAAAGACGGCGCTGATCGCGCGCTTCCTGCATGACCGCTTCGAGCCGCGGCACGCGCGCACCGTGGAGGAGCTGCACGCGCTCGAGTGCGACCTGGACGGCGCCGCGCGCCTGCGCCTGGAGATCCTGGACACGAGCGGCAGCTACGCGTTCCCGGCCATGCGCGCGCTGCGCATTCGCACCGGCGACGCCTTCGCGCTCGTGTACGCGGCGCGTGATCGCGGCTCGCTGGAGGAGGCGCGGCGCCTGCGGGACGAGATCCTGGAGATCAAGGGCGACGCGTTCGACGCCATCACGGTGGTGGAGAGCAAGGCGGACCTGGCGAGCCGCAGCCGCGCCGAGAGCGCGCGCACCATGCGCGCCGTGGAGGAGGAGTGGCGCGCGGGGTTCGTGAGCGCGTCCGCGCGCACCGGCGAGAACGTCGCCGCGGTGTTCCGAGAGCTGCTCGCGCGAGCCGACCTGCCCAGCCGCGTGAGCCCGGCACTGCGCAGGCGCAGACAGACCTGCGGGAGGGACTGCGGCGATGAGAAAGCCAACATGAGGAAAAACAGCAGCTGCGTTCTGTCTTAATCAAAAACCTCCACCGGTAACCTGCACTAACGCCTCACGCTGACGCACTTCCGGTGGCGCAGAACTCagtctgacctctgacctctgacctttctaCACCACTGACTCTTTATGTGCCAGTGTTACAGAACTGCAGAAAAGTAAATGATGTGTATGTGAAAGAGTAAACATACTTTTATACCTTTCTGAAGTTTCTGCTGGTTTATTTTCAGCATcataaactcctccgtcctgaagaaaCGCACAgctacagcttcacctctgactgttacgaagcgctgacactggagactccttccttacatgttacatccttacagaaatcttcaccacatcagtgatTGTTTTAgttacaggaaatgaatcagtactttctgaccaatcagacatGAGAATTCAGTGTATCTGATACTTACGATGCATATTACAATctttgtacatattttaaaagCCTGTAATTACACACATAACTGTAATTGATATTTTTATCGTATTTACAGCGAGAGAAATCCTTCTGTTCTCGGCGAATAAACCATTCGTGTGTGATGTGAAAGTTGGTGGCGTGGACATTTACGCCAAACTGGAGCAACTACActttatcaaaaatatattagactttaaatctgtgtatctatttctgtatttctctgaactttaattaaagctgttttgtgttcGTTATTGTCATTacgaattaattaataacaatttaattaaagaaatgttgATGGACATCAGCACGATGGTGTCATTTTGTATGAAAATGTCATTTGTTGAAATGAAGCTGAAGTAAA

Function

NR:

description
PREDICTED: GTP-binding protein Rhes-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437049 False 828 lncRNA 0.44 1 591252 592079
XM_026929185.2 True 1460 mRNA 0.53 1 591136 592595

Neighbor

gene id symbol gene type direction distance location
plk1 plk1,LOC107722962,LOC107702528 coding downstream 1740 582498 ~ 589396 (-)
chtf18 chtf18,LOC107725360 coding downstream 32924 544258 ~ 558212 (-)
uncx4.1 LOC108258667 coding downstream 66071 518604 ~ 525065 (-)
elfn1b elfn1b,LOC108258545,LOC108439159,LOC107722936,LOC107590768,LOC107702506,LOC107714143 coding downstream 182847 352453 ~ 408289 (-)
rgs11 rgs11 coding downstream 313453 262153 ~ 277683 (-)
LOC113535779 cacng3,LOC108258515,LOC108439097 coding upstream 52881 645476 ~ 651428 (-)
tlr2 tlr2 coding upstream 110604 703199 ~ 711315 (-)
fscn1b LOC108258690 coding upstream 304629 897224 ~ 902489 (-)
smcr8b LOC108258855 coding upstream 371260 963855 ~ 969617 (-)
mief2 mief2,LOC108258856,LOC107722977,LOC107725398 coding upstream 378197 970792 ~ 979232 (-)
G368903 NA non-coding downstream 9276 578593 ~ 581860 (-)
G368725 NA non-coding downstream 309233 281439 ~ 281903 (-)
G368713 NA non-coding downstream 346356 244177 ~ 244780 (-)
G368689 NA non-coding downstream 397222 185834 ~ 193914 (-)
G368685 NA non-coding downstream 406490 179182 ~ 184646 (-)
G368912 NA non-coding upstream 79045 671640 ~ 673030 (-)
G368944 NA non-coding upstream 108489 701084 ~ 701288 (-)
G369130 NA non-coding upstream 278994 871589 ~ 875203 (-)
LOC117596193 NA non-coding upstream 674111 1266706 ~ 1270425 (-)
G369243 LOC108258881,LOC108261507 non-coding upstream 684478 1277073 ~ 1277650 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 301228 284863 ~ 289908 (-)
si:dkeyp-75b4.8 NA other downstream 364034 202654 ~ 227102 (-)
prkcba prkcb other upstream 60858 653453 ~ 702345 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 277164 869759 ~ 948803 (-)
G369125 actb other upstream 318958 911553 ~ 915683 (-)
G369242 LOC108258881 other upstream 683426 1276021 ~ 1276813 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 945858 1538453 ~ 1611666 (-)

Expression


Co-expression Network