prkcba (prkcb)


Basic Information

Item Value
gene id prkcba
gene name prkcb
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 653453 ~ 702345 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437066
GCGTTCCGGAGCAGCGTAGCTGCGCGCCGCCTTCGACGGGAGATTTTCGGGGCATCGAGAATCACATCTcggcctgtctctctctccctctctctctctccctctctctccctctcttttttttttttttaaagtattccGGAGGACATGGCGGACCCAGGAGCGGACGGCGATGCGGGGGGCGCGCGCGGTTTCGCGCGACAGGGCGCGCTGCGGCAGAAGAACGTGCACGAAGTGAAGGACCACAAGTTCATCGCGCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGgtgagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaagg
>XM_034300404.1
tactaTGGAAGTGGAAGTATGTGGTTTGCTCACCATCTAGTGCACTAATCTGGCACACTATCTAGTGCGGAAGTGTGCTGTTTATCTGTTAGGTAGTGAACGATTTTGACATACTGTCTAGTGCGGAAGTGCGCAGGTTTGCCCAGGAGTTAGTGCACTACTTTAGCACACTATTTAGTGCAGGAGTGCGCATTTTGGTACCTGAACTCGGACACGTTTGTAAAAACctcatttaaacaaatacatcATTCTTTGGATGTTTTCGTACACAAAACGGGGCGTggcttcaggtttttttttaaacccaacCACAGTGAAGGAGAAGGAGGGAAGGGGCGGAGCTTTCGCCCAACCGGGAAGCGGAGCGCGTTCCGGAGCAGCGTAGCTGCGCGCCGCCTTCGACGGGAGATTTTCGGGGCATCGAGAATCACATCTcggcctgtctctctctccctctctctctctccctctctctccctctcttttttttttttttaaagtattccGGAGGACATGGCGGACCCAGGAGCGGACGGCGATGCGGGGGGCGCGCGCGGTTTCGCGCGACAGGGCGCGCTGCGGCAGAAGAACGTGCACGAAGTGAAGGACCACAAGTTCATCGCGCGCTTCTTCAAGCAGCCCACCTTCTGCAGCCACTGCACCGACTTCATCTGTGTGCGGCGTAAAGGCTGTGAGGACCCCGCTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatttagtGTGCTGTTTCGTGGTCCACAAACGCTGCCATGAGTTCGTCACATTCTCCTGCCCAGGAGCGGACAAAGGGCCGGCATCAGACgatCCCCGCAGTAAACACAAATTTAAGGTACACACATACTCCAGTCCCACTTTCTGTGACCACTGTGGATCTCTACTTTACGGACTCATACACCAGGGGATGAAATGCGacaCCTGCATGATGAATATTCATAAGCGGTGCGTGACCAACGTTCCGAGCCTGTGCGGGACGGATCACACGGAGAGGAGAGGACGACTGTACATCAGCGCCGACATCAAAGAGTGCAAGCTGACCGTAACCATCAGGGAGGCTCGGAACCTGGTGCCGATGGACCCGAACGGCTTGTCGGACCCGTACGTGAAGCTCAAACTGATTCCCGACCCCAAGAGCGAAAGCAAGCAGAAGACTAAAACCATCAAGTGTTCGCTCAACCCCACCTGGAACGAGACTTTCGCATTCAATCTGCGGGAGACGGATAAGGACAGACGTCTGTCTGTGGAAGTCTGGGACTGGGACCTGACCAGCAGGAATGACTTCATGGGTTCTCTCTCGTTTGGCATCTCCGAGCTCCAAAAGCAAGGGGTCAGTGGCTGGTACAAATTGTTGAGCCAAGAAGAAGGCGAATATTTTAATGTTCCAGTCCAACCCGATGGTGAAGAAGGTAACGAGGAACTGCGGCAGAAGTTTGAGAGAGCCAGGATTGGTCCGGGCAACAAGAACGCCGACAGCTCGTCGTCCAACGACATCTCCAAATACGACGCCAACGGCAACCAGGATCGCGTGAAGCTCTCCGATTTTAACTTCATCATGGTACTGGGAAAAGGCAGCTTCGGAAAGGTGATGCTGGCCGAGCGTAAAGGAACGGATGAACTTTACGCCGTGAAGATCTTGAAGAAGGACGTCGTGATCCAGGACGATGACGTGGAATGCACCATGGTGGAGAAGAGAGTTCTGGCGCTTTCCGGAAAACCGCCTTTTCTCACGCAGCTGCACTCCTGCTTTCAGACTATGgaccgCCTGTACTTTGTGATGGAGTACATTAACGGTGGAGATCTGATGTACCAGATACAGCAAGTGGGGAAATTTAAGGAGCCGCATGCTGTgttctaCGCTGCAGAGATTGCCATTGGTCTATTCTTTCTCCATTCAAAAGGCATCATTTACAGagactTAAAGTTGGATAACGTGATGCTGGATTCTGAGGGTCACATTAAAATCGCCGACTTTGGCATGtgcaaggagaacatgcacgaCGGCGTGAATACGAAAACCTTCTGTGGAACTCCGGACTACATTGcacctgagATCATTGCCTATCAGCCGTACGGGAAGTCTGTGGACTGGTGGGCGTACGGAGTTCTGCTGTACGAGATGTTAGCGGGACAGCCTCCGTTTGATGGCGAAGATGAAGACGAGCTTTTCCAGTCCATCATGGAGCACCACGTTTCCTATCCGAAATCCATGTCTAAAGAAGCCGTGGCTATATGCAAAGGCctgaTGACGAAGCATCCGGGGAAGCGTTTGGGTTGCGGCCCTGAGGGCGAGAGAGACATTAAGGAACACGCGTTCTTCCGGTACATGGATTGGGAGAAACTGCAGAACAGAGAGGTTCAACCTCCATTCAAACCCAAATCAAAGAATCGGCGCGACACTGGCAACTTTGACAAGGAGTTCACCAAGATGGCAGTGGAGCTCACTCCGACGGATAAACTCTTCATCATGAATTTGGACCAAAACGAGTTCCAAGGCTTTTCCTACACCAATCCCGAGTTTGTCATTCAGGTGTAACCTCCGGTCTGTGATCGGTTTCTCCTTCACCGCAGCATTAAAGTCCATCTTTCGAATGTGAGAcgaggagatcagcagtttcgtGTCCTCATTTTCCCATGGCGTGACCGACTCAAGTATCTCAGAAACACTGGATTAAGTGGAGGGGAAGGGAAGAGAGATAAACAACAATGTTCATAATCTCCATGAGAATGTTTTGTCATCTCCATGAGAATTATCCTACCACTCCCTGTATTTCCTGCTAGCCCAAATTCCAATGAAATCAAACACCGAATTTTAGCAAACATCACTCAAACATAGAGGCTTCTACTCTACCAGTTCTAACATTACaccagtttacacagaatttacACAAtgtcatgttaaaaaaacatacagcctaaattataacaaataagttttattaatacataatacatcaCCATCCCTGTTTTTTTCCAGTTCAAACATATCATTGTTAGCAAGGACAATTCActtttgataaaaataaataaataaataaaaataggctCATCCATACTTAGTTTGGGTGTTTTATGTGGGATACAgaaaatttttaacaaaatggcaaTCTGAGTGGCATAGAAGACATTTGAAAGCTTGCGTTAAGCTTCAATTTAAAGTTAAGATGATTTGTGGTTATAGTTGATAGTGCTACAATGGCTTGCggaagtattcacccccccccttgaacttttccatattttgtagtgttacaaaagcacggtggtggtagcatcatgttcagATTTACCCACGGCTTTTTGTTTTATCCCATCACAGATTTTTAATGGATAGCCCCCTCTAGGAAGAGTGACAGTtgtgtctttttcattttttttaaataatatatttaatgttgctcTGCAGGATGTTTAAAGTTTGGGATCGTTTTCATACCCAAACCCTAATTAATGCTTTTCCACAGAACTTTCTTTTGAtcgctccttggtcttcattaTGCCATTGGTTTAGGTAACAAACTTTATAACTTTACAACTTTTATAATTTCACTTCAGTGTTATGGTCTATTTTCTaagttcaaggggggtgaatacttatgcgcATCCACTGTGTAagtgcaattttattttatcttgcTTCAGTTTAAAGGTTAAAACAATAAACGCCTGCATTAACACATAACATGAAAGGTTagttttaattaataagaagAAACACATTTTCTATGTCAGAACA

Function

symbol description
prkcb Enables several functions, including androgen receptor binding activity; nuclear receptor coactivator activity; and protein serine/threonine kinase activity. Involved in histone H3-T6 phosphorylation; regulation of glucose transmembrane transport; and regulation of transcription by RNA polymerase II. Located in cytosol; nucleoplasm; and plasma membrane. Implicated in dilated cardiomyopathy and lung non-small cell carcinoma. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: protein kinase C beta type isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K19662 PRKCB; classical protein kinase C beta type

RNA

RNA id representative length rna type GC content exon number start site end site
TU437066 False 364 lncRNA 0.59 1 701616 701979
XM_034300404.1 True 3777 mRNA 0.46 17 653453 702345

Neighbor

gene id symbol gene type direction distance location
LOC113535779 cacng3,LOC108258515,LOC108439097 coding downstream 2025 645476 ~ 651428 (-)
plk1 plk1,LOC107722962,LOC107702528 coding downstream 64057 582498 ~ 589396 (-)
chtf18 chtf18,LOC107725360 coding downstream 95241 544258 ~ 558212 (-)
uncx4.1 LOC108258667 coding downstream 128388 518604 ~ 525065 (-)
elfn1b elfn1b,LOC108258545,LOC108439159,LOC107722936,LOC107590768,LOC107702506,LOC107714143 coding downstream 245164 352453 ~ 408289 (-)
tlr2 tlr2 coding upstream 854 703199 ~ 711315 (-)
fscn1b LOC108258690 coding upstream 194879 897224 ~ 902489 (-)
smcr8b LOC108258855 coding upstream 261510 963855 ~ 969617 (-)
mief2 mief2,LOC108258856,LOC107722977,LOC107725398 coding upstream 268447 970792 ~ 979232 (-)
alkbh5 alkbh5 coding upstream 278525 980870 ~ 986570 (-)
G368903 NA non-coding downstream 71593 578593 ~ 581860 (-)
G368725 NA non-coding downstream 371550 281439 ~ 281903 (-)
G368713 NA non-coding downstream 408673 244177 ~ 244780 (-)
G368689 NA non-coding downstream 459539 185834 ~ 193914 (-)
G368685 NA non-coding downstream 468807 179182 ~ 184646 (-)
G369130 NA non-coding upstream 169244 871589 ~ 875203 (-)
LOC117596193 NA non-coding upstream 564361 1266706 ~ 1270425 (-)
G369243 LOC108258881,LOC108261507 non-coding upstream 574728 1277073 ~ 1277650 (-)
G369298 NA non-coding upstream 663018 1365363 ~ 1375213 (-)
G369297 NA non-coding upstream 667789 1370134 ~ 1396598 (-)
rasd3 LOC108258668 other downstream 60858 591136 ~ 592595 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 363545 284863 ~ 289908 (-)
si:dkeyp-75b4.8 NA other downstream 426351 202654 ~ 227102 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 167414 869759 ~ 948803 (-)
G369125 actb other upstream 209208 911553 ~ 915683 (-)
G369242 LOC108258881 other upstream 573676 1276021 ~ 1276813 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 836108 1538453 ~ 1611666 (-)
G369586 NA other upstream 1073974 1776319 ~ 1795224 (-)

Expression


Co-expression Network