zgc:77849 (zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708)


Basic Information

Item Value
gene id zgc:77849
gene name zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 869759 ~ 948803 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437270
gcgtgagtgagtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgataccTGCCTCCTCCAAACAGCGCCTGTCACTGCCCCAGCTCAGCTACCACACTGCGGCTTAAAGAcaaacaagtgttttttttttattttattgttattattattattttaattttaaatattatttacaatgttatttgtatttttattttatttctcgccttctgttttcttttgttttttgtttttttttgctgctcaAGAAGCAGGCACAAGTGCTCCAAAAGCAGTACTTACTCTGTGTGAGCATGACCCTGAatcacttcattttatttttcttctactGTGAAGTTCTCATCCTTCTCATGAGTTCATTCTGTAATCttccactcctcctcctcctcctcctcctctcactctcgtcctcttcctcctcttcttcctcttcctcttcctcctcttcctcagcaCATCTCCGGTGTAACtttatgaa
>XM_026928986.2
GTCTCGCCTGCGCGTCGCCGTTTTGTTTTGTCAACCGGTGGACTTCATGCGCCATGCAGCCGCGGGTTTGACGTGGGGGATAAAAAACCCTAACAGCTGTGGATAAGGCCGCGGCGGGATCCAGGAATTCATTTCGgaataagtataaaaatattatctGACACATAAAACAATAGTCGGTGATATCAGTAGTtatggaggagaagaaggaggagggagAAGCGGAGATCCAGGAGCACGGACCCGAGCACTGGTTCTCCAAATGGGAGCGGCAGTGCCTGGCTGAGGCCGAGCAGGACGAGCCGAGCGAGGAGGAGCCGGAGCAGAGCCGGCAGAAGCTGTGGCATCTCTTCCAAAACTCCGCCACGGCGGTCGCGCAGCTCTACAAAGATCGAGTGTGTCAGCAACAGGGGCTTTCTCTGTGGGTCCCATTTCAAAATGCTGCTACAGCCGTCACCAACCTTTATAGAGAGAGCGTGGAAGCGCACCAGCGCAGCTACGAGCTAGGCATTCAGATTGGCCACCAGAGACGCAACAAGGACGTGCTCGCCTGGGTGAAGAAGAGGAGGCGGACCATCCGGCGCGAGGACCTCATCAGCTTCCTGTGCGGCAAAGCCCCACCCCCACGCAGCTCACGGGCTCCGCCCAGAATCGCCATGGCGCCGTCATCAGAGACGAGCTCTTCCGTCGAGACAGACCTGCAGCCGTTTAGGGAGGCCATCGCTCTGCACGgccTGAGCGGTGCCATGGCGAGTATAAGCATGCGCTCCGGAGCACCGGGATCGCCCACACACCTGAGCGCAGGCTCCACCCCCGGCCGCCGCAGGAACGGTCTCCACGACGTCGACTTGAACACCTTCATCGCCGAGGAGATGGCGCTCCACCTGGACAACGGCACCCGCAAGCGGAGCTCCGCCCAGTCGCGGTGATGTCATCACAGACTCGCCCACCCACAAACGCAATAGGATGATCTGAGCTGTCTCGAGTTGACACGGAGGGGAGTGGGgggaaacaaaaaaggaaaagaaaagattaagagaaattaaacaaactaaaaagcCACTTGTCAGTCATCCTCCCATCTTTACTCCGAACGGGAAAACCTCGCGGCGGTCCGGCGCGTTCCTCCGAACCGATCGAAAGAACCGAGCGGGAGGCGGAGGCTCAGCGCAAAGTGCCCTTCCATGCGATTACGCCtgcatacactcacacaccttcAGTTCACCTTTTTCTGTTCGCGTCGAATGTCCGAGCGAGTACGATGAAACTCGTACCGAGTGCGggagaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagatataaGTGGTGTGAGTGATGTTATGAATGTAAaggtgtgtttttggtttgcatagtgagtgtgtgtgagtgtgtgttagtgcgaacatgtgagtgtgtgtgagtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgataccTGCCTCCTCCAAACAGCGCCTGTCACTGCCCCAGCTCAGCTACCACACTGCGGCTTAAAGAcaaacaagtgttttttttttattttattgttattattattattttaattttaaatattatttacaatgttatttgtatttttattttatttctcgccttctgttttcttttgttttttgtttttttttgctgctcaAGAAGCAGGCACAAGTGCTCCAAAAGCAGTACTTACTCTGTGTGAGCATGACCCTGAatcacttcattttatttttcttctactGTGAAGTTCTCATCCTTCTCATGAGTTCATTCTGTAATCttccactcctcctcctcctcctcctcctctcactctcgtcctcttcctcctcttcttcctcttcctcttcctcctcttcctcagcaCATCTCCGGTGTAACtttatgaaatgtaaataacagtAGGTGCTGACATAGACTTGTGGTACATATTGTAAAAAAGAGCTGTGCAGAGACCATTGAATTGTTAATGTACAATAATGATTCTTGCATTAAAGAAATGAAGCTTTTAACTAAA

Function

symbol description
zgc:77849 Acts upstream of or within cellular response to xenobiotic stimulus. Orthologous to human C16orf72 (chromosome 16 open reading frame 72).

NR:

description
PREDICTED: UPF0472 protein C16orf72 homolog

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437270 False 503 lncRNA 0.40 2 869887 948803
XM_026928986.2 True 2079 mRNA 0.51 4 869759 879270

Neighbor

gene id symbol gene type direction distance location
tlr2 tlr2 coding downstream 158444 703199 ~ 711315 (-)
LOC113535779 cacng3,LOC108258515,LOC108439097 coding downstream 218331 645476 ~ 651428 (-)
plk1 plk1,LOC107722962,LOC107702528 coding downstream 280363 582498 ~ 589396 (-)
chtf18 chtf18,LOC107725360 coding downstream 311547 544258 ~ 558212 (-)
uncx4.1 LOC108258667 coding downstream 344694 518604 ~ 525065 (-)
smcr8b LOC108258855 coding upstream 15052 963855 ~ 969617 (-)
mief2 mief2,LOC108258856,LOC107722977,LOC107725398 coding upstream 21989 970792 ~ 979232 (-)
alkbh5 alkbh5 coding upstream 32067 980870 ~ 986570 (-)
myo15ab LOC108258396,LOC107725350,LOC107692700,LOC108441473,LOC108439093 coding upstream 38952 987755 ~ 1026021 (-)
cacna1hb LOC108258317 coding upstream 103587 1052390 ~ 1113599 (-)
G368944 NA non-coding downstream 168471 701084 ~ 701288 (-)
G368912 NA non-coding downstream 196729 671640 ~ 673030 (-)
G368903 NA non-coding downstream 287899 578593 ~ 581860 (-)
G368725 NA non-coding downstream 587856 281439 ~ 281903 (-)
G368713 NA non-coding downstream 624979 244177 ~ 244780 (-)
LOC117596193 NA non-coding upstream 317903 1266706 ~ 1270425 (-)
G369243 LOC108258881,LOC108261507 non-coding upstream 328270 1277073 ~ 1277650 (-)
G369298 NA non-coding upstream 416560 1365363 ~ 1375213 (-)
G369297 NA non-coding upstream 421331 1370134 ~ 1396598 (-)
G369302 NA non-coding upstream 436118 1384921 ~ 1385662 (-)
prkcba prkcb other downstream 167414 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 277164 591136 ~ 592595 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 579851 284863 ~ 289908 (-)
si:dkeyp-75b4.8 NA other downstream 642657 202654 ~ 227102 (-)
G369242 LOC108258881 other upstream 327218 1276021 ~ 1276813 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 589650 1538453 ~ 1611666 (-)
G369586 NA other upstream 827516 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 875401 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 1617954 2566757 ~ 2574471 (-)

Expression


Co-expression Network