G369125 (actb)


Basic Information

Item Value
gene id G369125
gene name actb
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 911553 ~ 915683 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437316
ACatgtgcacattttattgttttcatgtCAGTGTACAGAGACACCTTGGCTCACAGATCCTTTACCCATAACCCCCAGGGAAGCTCACTCTAATGGGtaaagcttttttcccccccttccactgtagaacaaaaacaaatggaCCAAGTTTAAGGCTGaggtacaaaaacaaaaagacattgTATCGagtacataatttacataaacactAACAAGGTCATGTACTTCCCACAGTGACGTGGGTGGAGAGGAtggaaatgtgtgaaacatgaCGCTATTTGGAATGACTAAAAAGAAATGTACATTGAGTCCTCTTAGGGAAAGCTCCTCCCCctgtaagaaaaagaaatttcagAGAAATTCCAGTTTCCTCATCTCAAGGCAGTGCATCGTACAGAGCAGAAGCCATGCCCGTGTGGTCTTATCTGAGAGGGGAAGGCATGTtggtcatatttttatttttatattttttttttgagccagCCTCAGGGGCTCGGCTGTGGTGGTTACAGTCCTGTTTAGAAGCACTTCCTGTGGACGATGGATGGGCCGGACTCATCGTACTCCTGCTTGCTGATCCACATCTGCTGGAAGGTGGAGAGGGAGGCCAGGATGGAGCCACCGATCCATACAGAGTACTTGCGCTCAGGAGGAGCAATGATCTAGAAGAGGAtagaaataagatttttttagtACAGTCACACTATGTTCTGGTAAAAAATAAACCCTCAGCCATAACCCAGAAAACCTTACCTTGATCTTCATGGTGGAGGGAGCAAGGGAGGTGATCTCCTTCTGCATGCGGTCAGCGATGCCTGGGTACATGGTGGTACCGCCGGACAGCACAGTGTTGGCGTACAGATCCTTACGGATGTCGACGTCACACTTCATGATGGAGTTGAAGGTGGTCTCATGGATGCCACAAGACTCCATacctgaggaagagggcagggaAAAGATCCTTTACACACTGAACTGACTTTATAATAGTGTTGAATTCAACACCAGAGTGGCAGCCACTGAGTTAGTATTAATGCTCACCCAGGAAGGAGGGCTGGAAGAGGGCTTCGGGGCAGCGGAAACGCTCGTTGCCGATGGTGATGACCTGTCCGTCAGGCAGCTCGTAGCTCTTCTccagagaggatgaggaggcgGCGGTGCCCATCTCCTGCTCGAAGTCCAGAGCGACGTAGCACAGCTTCTCCTTGATGTCACGCACGATCTCACGCTCGGCTGTGGTGGTGAAGCTGTAGCCGCGCTCGGTCAGGATCTTCATCAGGTAGTCTGTGAGGTCACGGCCGGCAAGGTCCAGACGCAGAATAGCGTGGGGCAGAGCGTAACCCTCGTAGATGGGCACAGTGTGGGTGACACCGTCTCCGGAGTCCATCACGATACCTGTGGTACGACCGGAAGCGTACAGGGACAGCACGGCCTGGATGGCGACGTACATGGCAGGTGTGTTGAAGGTCTCGAACATGATCTATGCAGGGAGATGAGCATTAAGGTATTTTAACCACTCAGCCACAGATCAAGTCTAAAGTGCTGACAATCCAAAGCAAAAGGCACACAAAGGTCACTTGCACTTAGAGCTTTAACACAAAGTCTCCATTACGTCAACACAACATGCATCGGGTTAATAACGTTCAGGATTAAGTTCTAAAACCCATGGAGGTCATGCAGTAAGAAAATACAAACATGAACCTGTAGCCTCCAAATAGAAAGAAAGTTCAGTGTATAGGTTGGAAAGCCTGAGaaggaagattaaaaaaaataaataaataaaggaggagtcaacaaaaaaaaaagatggagttTGGGAAAAAGCTACTGAAATGGCACTTTGTGTACCTGTGTCATCTTCTCCCTGTTGGCTTTGGGGTTCAGGGGAGCCTCTGTAAGGAGGACGGGGTGTTCCTCAGGGGCCACACGCAGCTCATTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCGTCCCAGTTGGTGACAATACCGTGCTCAATGGGGTACTTCAGGGTCAGGATACCTCTCTTGCTCTGAGCCTCGTCTCCTACGTAGGAATCCTTCTGGCCCATACCAACCATCACGCCCTACAAGAGAAGACACGTTCACGTTACACGCTGCTTGCATCCATATAGAACATGTACATCACATCAGTGCACAAGTAGCTTTCTAATTAGGGAAATAAATCTCCAATTGGGCACAAAACATGTTGAATTATAAACTATTCTGATCCATTTTGAAGCTTCTTGTTCTTTCAAGGGAACCAATTTGACTGCAAAGCTGTGTCTAGTGCTGTTGGGTCAGTCATGTTCCTGAATGCAAATCCAAGCCATGCAAATTGTCCATTAGTGCACTGGTGAATACCAGAGGAGGATCATTTTTAAGGTTGGAGCAGTTccagtttgtgtatttttgtgcataGACCCATTTGTGCCTTCCTGAGTGATATGATTTAAACACAACCTAAACGAACTGAATTCAAGGATTGACATCACCCAGGACACATGGTTCTCAGGGTGGGGTCCATGATGTACATCCATGTGGCTCCCTGACTTTCTAAAGTCACGTGACAGATTACAGTCACTATTCAAGGATGTTATGGTTAGCATTTAGCTGTAATAATGAAACCCAGGAAGTGCCGTTAACACAAGTGGACGTAAACACAGTAATGGCTCATACAGGTTCATGCGAATAAGGTTGCTCTACTGTTCACAAAACTAAACCTGACTATAAGGTGGTCTTTGGAAATTCCTTTACTCTGGAAGCCATCTTAAACATTTAGGAATCcctgtttgtaatatttaaaaaaaaaaaaatacattatgacTTTATGGTCTTGAGAGATGTGTTCTAAAGGAGGCAGGTTTATTTAGAAACAAGAGAAACGTACCTGATGCCTGGGACGACCGACGATGGAAGGGAAGACAGCGCGAGGAGCATCATCTCCAGCGAAGCCGGCTTTGCACATACCGGAGCCATTGTCAACAACCAGAGCAGCGATTTCCTCATCCATGGCTgtttttaaggaataaaatgggAAATTAAGTTACtgtgaaccacacacacacacacacacagtgattttaAGCAAGGAGGAGCTGAACATCCGCCtcagacatgcacacaccctTTATAAGGAGATATTCGTGATGACCAGCAGGTGGCGCACAGGCGCAAAGCCCAAAACTGAGCGGTTTGAGACAAAGGAAGTGGCCAAGCAGATTCGCTATTGCCTTATATGGCAATAAGTTCGACCGGCTCGTGCGCTGCGACCACTCCCCATTTCACACAGCCTCATTATGCGCCATGCTGAATGGACACCATTATCCATTCCCTCAGCATTAttcatcactttcacacacgCAAAACCTTACTCTAAAGCATAAAAACACGCCAATTCTCCAGCAAACATCTGCAAATAAGACCAGAGCAACAACAGCTGCACAGTTCACTCTAccaagctttaaaaaaagactCCTAGTTTTATATTAACCAGCATTTAATACAGTCAATCTTCTACACCTAATGTTATTCAGcatgtctgtatttattaaaagtcGAAATAtgatgaaaagacagaaagatgcCTGCAGAAGGGCATCAGTGTCCCAGCCACACCCACTATTCAAACATCCACCCAACTTACAGCTCACTCAGCTCAAGGCTTCCAGAATATTCCAGCCATTttatcattcaaaaaaaaaaaaaaacctttacttTAGCATATAAAAGAGCATAAAAACCTCAAAGtctgtatgcattttttttaaccaagccACTCAGGAATACATTCCTCACTCATACCGAGTAATAATGGTGCATTTCTTTACAAAATATTCtcaaaaaacattacattagtACTGCTAGAATAACCAGCTAGGTATCATGTACACTAGAGATGCATGAAGAGAAATATAAAGGAAgaattatatagaaatattaataatttgtcATTAAGAAGACATTGTAAGATAGGATAACAAGCTAGCTATGAGCATAACCATAAttagaaaaagattttttaaaaaaacgcgTCTTACCGATGAATTAAAGGTTTAGCAGGAATGTAGTTGTGATAAAATGCCCCTCTTTGTGAGTGCACAGAAAAAC

Function

symbol description
actb Enables several functions, including Tat protein binding activity; enzyme binding activity; and kinesin binding activity. A structural constituent of postsynaptic actin cytoskeleton. Contributes to nucleosomal DNA binding activity. Involved in several processes, including apical protein localization; cellular response to cytochalasin B; and postsynaptic actin cytoskeleton organization. Located in several cellular components, including adherens junction; lamellipodium; and tight junction. Part of NuA4 histone acetyltransferase complex and ribonucleoprotein complex. Is active in glutamatergic synapse and postsynaptic actin cytoskeleton. Implicated in Baraitser-Winter syndrome. Biomarker of hand, foot and mouth disease.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437316 True 4111 TUCP 0.44 2 911553 915683

Neighbor

gene id symbol gene type direction distance location
fscn1b LOC108258690 coding downstream 9064 897224 ~ 902489 (-)
tlr2 tlr2 coding downstream 200238 703199 ~ 711315 (-)
LOC113535779 cacng3,LOC108258515,LOC108439097 coding downstream 260125 645476 ~ 651428 (-)
plk1 plk1,LOC107722962,LOC107702528 coding downstream 322157 582498 ~ 589396 (-)
chtf18 chtf18,LOC107725360 coding downstream 353341 544258 ~ 558212 (-)
smcr8b LOC108258855 coding upstream 48172 963855 ~ 969617 (-)
mief2 mief2,LOC108258856,LOC107722977,LOC107725398 coding upstream 55109 970792 ~ 979232 (-)
alkbh5 alkbh5 coding upstream 65187 980870 ~ 986570 (-)
myo15ab LOC108258396,LOC107725350,LOC107692700,LOC108441473,LOC108439093 coding upstream 72072 987755 ~ 1026021 (-)
cacna1hb LOC108258317 coding upstream 136707 1052390 ~ 1113599 (-)
G369130 NA non-coding downstream 36350 871589 ~ 875203 (-)
G368944 NA non-coding downstream 210265 701084 ~ 701288 (-)
G368912 NA non-coding downstream 238523 671640 ~ 673030 (-)
G368903 NA non-coding downstream 329693 578593 ~ 581860 (-)
G368725 NA non-coding downstream 629650 281439 ~ 281903 (-)
LOC117596193 NA non-coding upstream 351023 1266706 ~ 1270425 (-)
G369243 LOC108258881,LOC108261507 non-coding upstream 361390 1277073 ~ 1277650 (-)
G369298 NA non-coding upstream 449680 1365363 ~ 1375213 (-)
G369297 NA non-coding upstream 454451 1370134 ~ 1396598 (-)
G369302 NA non-coding upstream 469238 1384921 ~ 1385662 (-)
prkcba prkcb other downstream 209208 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 318958 591136 ~ 592595 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 621645 284863 ~ 289908 (-)
si:dkeyp-75b4.8 NA other downstream 684451 202654 ~ 227102 (-)
G369242 LOC108258881 other upstream 360338 1276021 ~ 1276813 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 622770 1538453 ~ 1611666 (-)
G369586 NA other upstream 860636 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 908521 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 1651074 2566757 ~ 2574471 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location