G369242 (LOC108258881)


Basic Information

Item Value
gene id G369242
gene name LOC108258881
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1276021 ~ 1276813 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437448
CCTGTAAATAGTTCTTGCTAGCACCTTTGGCTCTGCCTCCTAATGTGGACATTTCTAACATGGCAGCGATATCTCGAACACTTCCTCCTAAAACCCCTGATTCGGACGCAGGGCCACAGTCACTGCGGCGCCGTTCTCTGTACGTTACGCTTAGAAACGAATCACAAGGCTCGCCTTGGTTAACCCCACCCTCATTTGGCAGGTTTCCCGTGGAGATGGAGGAGCAAGAGCGCTTTGGTGGTGTTGGGGGGCGCGTCTTCCTGCGAGGTCGTGTTGTGGCGAAGGACTGGCTACGGTTTACTCCTCCAACATCCAGGGAGGACACAGTACGGCTGGCTCCACCCACCGTGGCATACTTCATGGTTGAGTCAGGGAAGGGCGGGTCTTTCCGTCTGGGTAAAGGAGGTGTGCCATCTTCATCTTCCTCAGCTGCGCTTTCTTGGGGAAGGCAGAGCAACGGGACTGAGCGGGCTTGAGAATTCGGGCGAGGGGAGGAGCTTTTGACTTTAGTGGGTGTATGTGGTGGTGTGTGGGCTGGACTGTTGCATGATGCAGGCTTTTTTAGCGGTGGTGGAGCATTTGCTCGCTGTATACCACGCCCCTGGGTGGTGTGCCTTGGAGAGCCACGTCCTTCCATTCCTCGGCGCGTTCTTGGAGCAGGGGTGGATTCTGGAGCATCTTGGTGTTTCGATGTTGTGCTTTCGTCTGACTGCCTTTCCTTACTGTAAGAGTCCTCCTCTTTCGGAGGCTGTCCCAGACGGTTAACGGCTAACATTAACTTCTTCTGATGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437448 True 793 TUCP 0.55 1 1276021 1276813

Neighbor

gene id symbol gene type direction distance location
slc5a10 slc5a10 coding downstream 29980 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 85473 1167628 ~ 1190548 (-)
cacna1hb LOC108258317 coding downstream 162422 1052390 ~ 1113599 (-)
myo15ab LOC108258396,LOC107725350,LOC107692700,LOC108441473,LOC108439093 coding downstream 250000 987755 ~ 1026021 (-)
alkbh5 alkbh5 coding downstream 289451 980870 ~ 986570 (-)
LOC113535431 LOC108258373 coding upstream 78910 1355723 ~ 1365906 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding upstream 235508 1512321 ~ 1518371 (-)
pard3ba pard3b coding upstream 342007 1618820 ~ 1738935 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 618235 1895048 ~ 1909374 (-)
klf7a LOC108258322 coding upstream 638850 1915663 ~ 1937075 (-)
LOC117596193 NA non-coding downstream 5596 1266706 ~ 1270425 (-)
G369130 NA non-coding downstream 400818 871589 ~ 875203 (-)
G368944 NA non-coding downstream 574733 701084 ~ 701288 (-)
G368912 NA non-coding downstream 602991 671640 ~ 673030 (-)
G368903 NA non-coding downstream 694161 578593 ~ 581860 (-)
G369243 LOC108258881,LOC108261507 non-coding upstream 260 1277073 ~ 1277650 (-)
G369298 NA non-coding upstream 88550 1365363 ~ 1375213 (-)
G369297 NA non-coding upstream 93321 1370134 ~ 1396598 (-)
G369302 NA non-coding upstream 108108 1384921 ~ 1385662 (-)
G369305 NA non-coding upstream 119791 1396604 ~ 1396905 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 327218 869759 ~ 948803 (-)
G369125 actb other downstream 360338 911553 ~ 915683 (-)
prkcba prkcb other downstream 573676 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 683426 591136 ~ 592595 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 986113 284863 ~ 289908 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 261640 1538453 ~ 1611666 (-)
G369586 NA other upstream 499506 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 547391 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 1289944 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 1566399 2843212 ~ 2853211 (-)

Expression


Co-expression Network