G369297


Basic Information

Item Value
gene id G369297
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1370134 ~ 1396598 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437512
gcacTGTCTCCATTATGAGGGAAAACACTCCTGCATGGCTGTTGCTAAGCCAGATCTCCAAAAGTTACACCACAAACACTAGAAgctaaaattaaacattcaaCCATACTAAGCACGTCTATCCTTCCTGACTGGTGGCTTATTGGCTTGactatattatgtatatatttatgtaccATACTGTGTTGTAacgtctctctcttttttccattgCAGAATTCTCCGTGGAAAGCTATCCTTCATCTTACCACTGAGACACCGCGTGTAGACGCATGAAGCTACCACATAAGATCTCCAAGAGCACTCTTGACACGTCCACTATAGACTTTAGAGTCTATAGAAACAAGTCTCTAGTACACTGAAAATTCTTCCAAGCATGCTTCAAGGCAGTGACTTTTCTTGAACAAGGTCTAAACAAACTTcaccagaaaataaataaatactttacagaaatctctttccatatattttttccatattaTGTTCACCTATACCTTGTTTCCTCTCACTTAGTTCCTTTTTCTAGTCTAAATTCTCATCGTTTGTGAACCTATCTGAcctcttttgttatttttttgtactCTGTCTGTCCATTTCCTGATTATAGATTTTCCCTCTGTGTACTTGGCTGCCTTTGTTTTGTCTACACTATGGTTAATAATTACTGGATTGCCCTCGAtaataaaaaatgctgaaatgcaTGTGTCCTGTCAATGTGACACTCAGCAATTTCAAGAAGCCTCTCCTGAAGCTGAACCAAGGTCCTCAATTTGACACGACATCCTCTGGCAGTCCTACCTTCTGATACTTGGAAGTCTGTGACAAAGTTCATCATGGCCCGAACTCTAGCACTGTTGCTTGTCAAAGGACAGGAAGTCAACTGGCAGTGCAAGGCTCTACTGACAGCATGCTCGCTGTAGACACTTTTCATAGCAAATGCTTTGAATTAGCCGCATTAACTGACTTGGCCTTGTTATTCAGCTAACAGGATGTTTAGTAACTTGTTTGGCATTACAGAAAACACCATTCCTGTAATCTAAGCACAATCTGTAAATTTGTTACATTGCTCACACAACTTCACATCGTGGAAATGTTAGCATTAATGTTGCAGCAACATTGTAGGAACATACTTTAAACGTTATTTCTTCAGAACACCCAAAAAAGCCATGGCAGAAATCATTCTGCTAGCTTAAAATTGTTAGCTGGGTGCATCATTCTGTCCATTGTGGAACGATCCACAGAAGATGGtgaatattttcaaataatctCTAATAAACCTACTAGgaacaaaaaagacattttaattgttatataaaaacatCAGGGCTAAATTAAGTACATGTAGTTTGTTTTAGACAATTTTActtaaaatggttttatttaaataagtataagtaaggaataaagcacttgcagtaagttagttcctattatcacttatgttataaaaagcactgacactggagactccttccatgaatgttaaatacatctccttacagtaaaccacaccatatcaatgattatttttctttgttaagtaaaaaaaaacattcttaattctattattattaaccttagATTATGTATATCTTGTGCGTCATTTGAACACGAGCTATGTTAAAGCAACTTGCTATTATAGAAAACtgatcaaccaatcagaatcgaggaTTCAACAGAGGTGTGGTATGAATACTAGTGGTTCATACATTATTGATGAGATGatggtgtcagtgtgtgttgttaaaTAGTTCAGCACTTTTGCATCCTTGCCACCTGGCTTCTGTCACTCAATGcgtgtctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggtgtgtatGCGCGGATTAGCCATAGTAAGCAGCAAGTGTATTCCTCCCACATCTCCATCTTCGCTCATTCATAACCTGCTCCAAATCCATGGTGCATTCTGTAAAATTCCTgttgcaaaaacattttgaagGAAACTACATTCTTTGTATCgtgaaaaaccaaaaacaacgAAAGAATCCAGTGAAAAGTCCGGCTTGTGCAGGTGAATAACGAGGAGTTTCCAACTCTCTGGTTTAACAGAGTCTAGCTACACAAATCTGGAAGCTTCCTTAAGCATAATTCTAGTTTATCAGTTCAGCAGCCGAGCCACAGACTGTCCCCGTAAACACacgagcacaaacacacagacaggctTTGtggggaaaagagaaaaagcagagGATAAATTATCCTGAGTAACACTGCGGATATTGATTTTGACCTCCACTTCATGTTTTGGCTCAATGGCCACCTTGTTAAATTCCTAATTTAGCACTATAGCAAACAAAGGAAGGGGAGAGGAAGCGAGAAAGACAGAGGCATACTACTATGTAGtgaaagatagaaaaaaaaaaaagcttaaacattatacaaATCAAGCCTCAGGTTCAAATTTGTAATCAAAGCCTGCAGTGCAGCGCTCAGAGAAGGtgtcagaaaaatgttttaaaggagTCATCAGTGGCAAGATCAAAAATATCATCCTAGGATACTGAAATGCAACTTACCTTGGATTAAAGGGCTTCAGCCAATCAGGAAGAGCCAAATCTGTAAACAAGGAACATCAAATAAATGATTACATAAGACAAAGCGCTGAAAATCCAGTAGGACCTGGAGTCTAGAGTTGCTCCAGGAAGGCTGTTAAAGCTTCAGGGAGAGAGTTTATCATCAGATCCCTTTAGCATAAGGGCCAGATAAACAAATTCTCATCACTGCATTCAACAGGCAGGAAGACGCACAAACTGTACCATTTATAATCCTTACTTCTGCAGTGTAAGACGACTGCAAAGCAAATATCAAGAAACGTAGGaacattttaaagctgaaaCGTTCCATATTTGAGAAACGAACCTGACAAACCTGAAGAAAAGTGATGCATTAATGCAGTAAGGTTGTCACATCTGGACAtaccacgtgtgtgtgtgtgtgtgtgtgtgtgagagaaatcCGGCCCAATATTAAACTCACCTTCTGCACAGCTGAAGAGGAGTCTCTGATATTCCTGCGACTTCACATCCTGATtacaaacaaagacaaaacgATTCATTTCCAACAGctgtattaaacacacactgtagtttaaattcatttaatgaACCTCAGAGAGTGAATTATAAATCAGGCACTGCTGAGCAGCGCTCATACGAGGTGTCAGAAAAATACAAAGGAGTCATCAGCAGttcagaaatgtatttaaaaatatataaatatacaaggTTTGTACCTCAAGAACTCAAACGTGGTCCATTAGAGTCCTGCTTTCTCCACTCATATTGCTACACTTCATGGACAGCTCAAATTCACCGTCCAATCAGAGGACTGCTTCATGTTTGGGAACCAATCACAACGCAGAAGGCGGGATCATGTGTTACTCCAGTCGGCCAAGCCATGTGAGCCTAGATTTagtcaaagaaaaagaaaaaaaaaaaaaaaaacagaacatttttaaCGTTTGCATctttattccacagcactgtttaattcttCACTGaatttcaggaaaataatcataatcaacaacagggtggcaATATTTCTTATCCTTaattattacactgtaaatTTTTATTACAGATCATTTAACATCCTGACTAcaagctaaagaaaaaaaaaaaaaaaaacaagaataaaaacacactagGTGAGAAATAACATCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437512 True 3695 lncRNA 0.38 2 1370134 1396598

Neighbor

gene id symbol gene type direction distance location
LOC113535431 LOC108258373 coding downstream 4228 1355723 ~ 1365906 (-)
slc5a10 slc5a10 coding downstream 124093 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 179586 1167628 ~ 1190548 (-)
cacna1hb LOC108258317 coding downstream 256535 1052390 ~ 1113599 (-)
myo15ab LOC108258396,LOC107725350,LOC107692700,LOC108441473,LOC108439093 coding downstream 344113 987755 ~ 1026021 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding upstream 115723 1512321 ~ 1518371 (-)
pard3ba pard3b coding upstream 222222 1618820 ~ 1738935 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 498450 1895048 ~ 1909374 (-)
klf7a LOC108258322 coding upstream 519065 1915663 ~ 1937075 (-)
LOC117596168 NA coding upstream 859823 2256421 ~ 2259148 (-)
G369243 LOC108258881,LOC108261507 non-coding downstream 92484 1277073 ~ 1277650 (-)
LOC117596193 NA non-coding downstream 99709 1266706 ~ 1270425 (-)
G369130 NA non-coding downstream 494931 871589 ~ 875203 (-)
G368944 NA non-coding downstream 668846 701084 ~ 701288 (-)
G368912 NA non-coding downstream 697104 671640 ~ 673030 (-)
G369305 NA non-coding upstream 6 1396604 ~ 1396905 (-)
G369506 NA non-coding upstream 96101 1492699 ~ 1574665 (-)
G369523 NA non-coding upstream 141479 1538077 ~ 1588650 (-)
G369573 NA non-coding upstream 388955 1785553 ~ 1823504 (-)
G369596 NA non-coding upstream 406511 1803109 ~ 1805302 (-)
G369242 LOC108258881 other downstream 93321 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 421331 869759 ~ 948803 (-)
G369125 actb other downstream 454451 911553 ~ 915683 (-)
prkcba prkcb other downstream 667789 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 777539 591136 ~ 592595 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 141855 1538453 ~ 1611666 (-)
G369586 NA other upstream 379721 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 427606 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 1170159 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 1446614 2843212 ~ 2853211 (-)

Expression


Co-expression Network