G369506


Basic Information

Item Value
gene id G369506
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1492699 ~ 1574665 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437731
TGCTCGTCTGAACAGTCACATTCAGAGTTGTTTTTCTCGTCGAATGTGGGAGTGATAGTGAGCGGACTGTGTCTGTTTATGATGGGAAGCACATTTGCCGGAGATAGGGATCTTTCATATTAAGCAGTTCTCAAAGAGGTGTGCCTTTTTTATACTTCTCTGGAAACAAGAACACCAAGTCATTGAACTCTCGGAGGATGGGGCAGGAAGTCAACACTTTTTACCATAGCTGGACCATCTGAACCCTGGGGGAAGAAACTTGCTTGCGCTTTCATTTAAATTCGGCTTGGATGACCGGCATACGGTGTTGTGTAAGGAACTAGCAGCCATCATTATCGATGTTTACTTCTAAGCTATAGACCAAATCTGTCATTTTCTGTTCATCACTAGTTTGGCAGAACTTTGAGCtgacagtttttttccccatcaaaCTGGGCTTCAAATCTTGTGCAAATTGGCTGCATCCTTTTGCTGGAACCTGACTGTGTGACTGGAGCTCATGATTGTAGCATTGGTCCTGGTgtaatgatgcaaaaaaaaaaaaaaaaaaaaaaaaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437731 True 559 lncRNA 0.42 2 1492699 1574665

Neighbor

gene id symbol gene type direction distance location
LOC113535431 LOC108258373 coding downstream 126793 1355723 ~ 1365906 (-)
slc5a10 slc5a10 coding downstream 246658 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 302151 1167628 ~ 1190548 (-)
cacna1hb LOC108258317 coding downstream 379100 1052390 ~ 1113599 (-)
myo15ab LOC108258396,LOC107725350,LOC107692700,LOC108441473,LOC108439093 coding downstream 466678 987755 ~ 1026021 (-)
pard3ba pard3b coding upstream 44155 1618820 ~ 1738935 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 320383 1895048 ~ 1909374 (-)
klf7a LOC108258322 coding upstream 340998 1915663 ~ 1937075 (-)
LOC117596168 NA coding upstream 681756 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 686624 2261289 ~ 2271653 (-)
G369305 NA non-coding downstream 95794 1396604 ~ 1396905 (-)
G369297 NA non-coding downstream 96101 1370134 ~ 1396598 (-)
G369302 NA non-coding downstream 107037 1384921 ~ 1385662 (-)
G369298 NA non-coding downstream 117486 1365363 ~ 1375213 (-)
G369243 LOC108258881,LOC108261507 non-coding downstream 215049 1277073 ~ 1277650 (-)
G369573 NA non-coding upstream 210888 1785553 ~ 1823504 (-)
G369596 NA non-coding upstream 228444 1803109 ~ 1805302 (-)
G369617 NA non-coding upstream 278684 1853349 ~ 1853782 (-)
G369618 NA non-coding upstream 279775 1854440 ~ 1854653 (-)
G369641 NA non-coding upstream 313839 1888504 ~ 1889374 (-)
G369242 LOC108258881 other downstream 215886 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 543896 869759 ~ 948803 (-)
G369125 actb other downstream 577016 911553 ~ 915683 (-)
prkcba prkcb other downstream 790354 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 900104 591136 ~ 592595 (-)
G369586 NA other upstream 201654 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 249539 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 992092 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 1268547 2843212 ~ 2853211 (-)
G370658 NA other upstream 3268664 4843329 ~ 4889381 (-)

Expression


Co-expression Network