G369523


Basic Information

Item Value
gene id G369523
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1538077 ~ 1588650 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437748
ATAAAGCCAATATTCTTCCCAGTTCCTTAGTGGATTTCTGAGGTCATAGATTGACAGACCTGCAGGGGGTCATCTCTGATATAGTTCTTTCACAAATCACCTATCTAAGGTATCCGATGTCTTTACTggggggaaagaaagaagactcttttggcatatttttaagTGGTAACTTGTAGCAGCAATATCATACTCCGATGTTAAAATGTGGACCTTGTaagcaaaatgcataaatttgTAGGCAAGTCTGGATTGATTGATAGATATGAGtgaattctgattctgatatctctgtgtgtctgctagtgtttttttttccccacaaaatgCTTCAAATCCACTTTGTCCCAGTCTCAAACCACAGTTCTGAGACTCTTAATGCCATCCAGAATCTGATGTTACAGATGCGTCCTTTGTTTTAGCACAGAGCCACACCAAACCTAccgcatttatttatttataagatgGAACAAATGGGGCTTTGGATGCATTAATGCTTTCAGGCTGCTGGTTTCCGGTGGAGGTTTTTATCTCCAGGTCCAAGGCAGATTGACAGAAAGACAACAAAAACATGACCAAAATGAAGGCCAGCCTTTCATCTGTCCGATGTAGTTTGTGCATTATCCACTTGGACAGGCTCCATGTGGGCGCTTGTTTGTTGTTAAGATTTTGGGGCGTTTGAAgtttggaggggaaaaaaaataaaaattgtgccATGAAGGATGGTCCCAGCCGGAGCTAGAAAAACAGCCTGTGGGTAAGTTTCATGCTCTCGGATTGGTCAGATGGCGAGGTTTCTGAGGTCTTGTGGTGAAGGAAGTGCTGGAGATCAATACATTTTCTGCACAtagtaaacatttttaacacaaagGCATTAGGATCAATTATACCGCAGTACTGATGAAATCTCGAttcggattggtcagaaggttctCTGTctgtagtgcagctacaaatcacaggtttataagaatacccttttttttcttctacttcattggtaacaacttacacaggaacttgtatacTGGGCACTCAATATATATAGATAAgtagacgtttatttaacattcatggaaggagtctccagtgtcagagctttgcgGCAGTAAGTTTTCTGGCCTTTTGGCACAAAGGCCTCAGTATATATATgacggtttatagctgctataacgtaagtgatcccaggaactaacttgttttgtggacgttcaactataaacaaattaaaaagtgtgtcgttctttaaaaaataaaaggtgtaAACATTGGTAGATTGCTGGGGTTTCAAAGGAGATTTGTAAAAGGGTTATCATGTAGAAGAAGTCTAAAGGGTAAGGCTAAAAAAGTAGCCCGTTGTTAATTAGCCGATATTGCTAATGCattacagacaaacagagacagaattTACATCACCACTTGAACACACAACCCTAGAGTTATTCTAATATCCATTCATGCGTGCACTATATGGAGATCCAGTGGTTGTGGGGTAAAAATTCCATCTGAAATTCAATATAAATCAGACTTTATATGTTtgtaatgaattataaatgaacCTCGGAGGCACTGAAGGTTGGACTTGATTGTGGCTTGTGATTGATTTATTAGTGTGTGAAATTAAGCTGTTGGAAAGATTGCTGTTGGAGAAAAGTTCAGTAGGCTGAGCGGACCACACGCACCACATGTAAGCCAATACTCAGAGTCATTTGAACTTTCGTCACTTTCTtgtctcgcacacacacacacacacacacacacacacaagtacaccaGTATGTTTTTGCAGCAGTGTGGAATTAGTTTCATCTGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437748 True 1815 lncRNA 0.40 3 1538077 1588650

Neighbor

gene id symbol gene type direction distance location
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 19706 1512321 ~ 1518371 (-)
LOC113535431 LOC108258373 coding downstream 172171 1355723 ~ 1365906 (-)
slc5a10 slc5a10 coding downstream 292036 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 347529 1167628 ~ 1190548 (-)
cacna1hb LOC108258317 coding downstream 424478 1052390 ~ 1113599 (-)
pard3ba pard3b coding upstream 30170 1618820 ~ 1738935 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 306398 1895048 ~ 1909374 (-)
klf7a LOC108258322 coding upstream 327013 1915663 ~ 1937075 (-)
LOC117596168 NA coding upstream 667771 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 672639 2261289 ~ 2271653 (-)
G369305 NA non-coding downstream 141172 1396604 ~ 1396905 (-)
G369297 NA non-coding downstream 141479 1370134 ~ 1396598 (-)
G369302 NA non-coding downstream 152415 1384921 ~ 1385662 (-)
G369298 NA non-coding downstream 162864 1365363 ~ 1375213 (-)
G369243 LOC108258881,LOC108261507 non-coding downstream 260427 1277073 ~ 1277650 (-)
G369573 NA non-coding upstream 196903 1785553 ~ 1823504 (-)
G369596 NA non-coding upstream 214459 1803109 ~ 1805302 (-)
G369617 NA non-coding upstream 264699 1853349 ~ 1853782 (-)
G369618 NA non-coding upstream 265790 1854440 ~ 1854653 (-)
G369641 NA non-coding upstream 299854 1888504 ~ 1889374 (-)
G369242 LOC108258881 other downstream 261264 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 589274 869759 ~ 948803 (-)
G369125 actb other downstream 622394 911553 ~ 915683 (-)
prkcba prkcb other downstream 835732 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 945482 591136 ~ 592595 (-)
G369586 NA other upstream 187669 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 235554 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 978107 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 1254562 2843212 ~ 2853211 (-)
G370658 NA other upstream 3254679 4843329 ~ 4889381 (-)

Expression


Co-expression Network