mdh1b (mdh1b)



Basic Information


Item Value
gene id mdh1b
gene name mdh1b
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1824204 ~ 1832729 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU437804
gagagagaaatagaaggttaaaaaaaaaaagcatttttaattaaaaaaggagATGCGCAAATAAAAATCCATAATGCAATCTGACACATCTGATCGctcattctgatattttttgtcGTTATTTAATCGTTGATacggtgacgttttctgtaaggagacgtttatgtaacatttatggaaggagtctccagtgtcggcgctttgtcgttgattattttcctataacatcacgacatggagtgttttattccttacatagcgTGACTGGATAATAGGAACACTAGGAGCAGTCgttatttgaaatatataaaaaaatactcgaatacactttttttccacatttttctcACACACGTACCCTTTCTGATCATCTAGGGCACTTCGGTGTTCCTGCCGGTCTCGTGTTTTGCGTTCCCGTGACCTTCCAGGAGGGCGAGTGGTCGGTGTGTTCAGACGTCATCATCCCCGAAGAGCTGCGGAGGAAACTGGAGGCTGCCGTTAATGAGATCACAGAGGAAAAGACCATGGCAGATGGAATAAGGATGAAAAGTTCTGTTGCCTGAAATcatatttcatttcttaaatCTCTTGAAGGAGCGTCGCAGTAAAATGGACGATTATTTATTATCGAAAATAAATGCCTGCTTCACTGTGAaagatttctttatttatctaaaagccatttactgtttattaatcttttttttactgtagtATATTTAgtgtaattgtatttatttgatcttttatgtatttaatgcaGGTTGtgttcaccatatcaatgtcCCAAAATGGCATAAATTCAGTTAGCGCTCAATGCTAACCAAACTTCCAGTGTAATTTTAGAGAAAATGAGTCTTTTTGTAGTAATTTACCAAAAAAACTGAGGTAAAATCGCCATGTTTACATCTCTGACGCAATGCTGAGTTCAGTTAGCGCTCAATGctaagtgtatttagtgtaatATTAGTCAAACGGTGCCTTTTTTCTAATAATTgatcaacacatctgaggtaaatgttgatctTTTCTACAGTTTTGTCGTATTTCTCCAGTCGCTGTCCTCTAACGTTGTCcatatatagatttataaaGACTTAAAATCAGTCAGAAAGtgtatttgagtattttttaaaaatatttatagttCTTAAATCTTCTGCTTCTTATACTGCTGTCATTATTTGATAACAGCAAAAAACTACAaacttttaatgaaaatttgtgACATCTTTGAGCTGAGACACACTGTTGACATTTCCTAATATGGCTGAACCTGAATGGTTAGCGCTCAATGCTAACGTACTTCCAGGTTAATTTTAGTCAAATGGAGTCTTTTCTTACTAAAtgaccaacacatctgaggtaaatgttgacctTCTCTAAGGTTTTGTCTTATTTCTACAGTCACTGTGCTTTTACGTTGTCCATTCATAGACTTGTAATACTTAATGTCTACATGCTAACTATAGTGGCTATAAAAGTTTACACAtgcctgttaaaatggcaggtttttgtgatgtattaaaaaaaataaatcagattaaaggtggaaaaaaaagtctgatgtgatgttttttgattaattttttttaacggGGGTGTGTAAACCTTTTATAGCTACTTTAGCATTATATATCGTTAATCTAATTTATGCTTAGCATTCATATTTCCATTCTATGTTCTGACAACTTAAAGAGTTGGTTTTATTTGAACACACCGTATTTTCCAGAGACAGtgattatgtatatatttaggCGTCGTTGATTGACTGGTAGAACGATAATTCATGACGATACGGTAATATGACATCAGCTGGTGATGGACAAATAAATACGAACGCAGTAGTGATGTGAATTCGGATTCTTTTCAGCGAGTCGGATCATTCGGCTCAGCTCAACAATGATTTGACTCTTTTGACTCTTTCGTAAATGACTCATTGCCTTTTCCTTCCCCCAAgtgattgttcttctttgttttatcTGTCTGAAATTTGTTACTCTtcataataacagtaataataataataacattttgcactaaaaaagtttttaaaaatctattcgTTGGTGAACAGAATCAAATCAAAGTCGATCCACTGAAAAGAGACAAAATTCCCATTCCATTAATTATAACAGACGTCATAATtcttaaccatttatagttacatttaatgttgcgaaACACCCGAGAAACAAGCTAGCGCCAGTcttcgcttacgttatagcagctatcagCAGTCGCTCCTTCACCagtttctcttgaagttaataagacgaaaacacgcagcttgtcatgttacaaaaaatccggaaaaacaaacaaacaaaaaaaacaacgtaaactcctctgtcttgaagatgtcggaaaacttcatcttcgctgacactggagactccttccataaacgttagagaattcaacagcgctgagGTAAAATAGGATATATAGCATAGATTTTTgctaaatatttcattaaatgtttatttttattaatatgtattcTCTATTTCACACCACAAACCTGCTGAGAGGGGAAGCCCCTCGAAACGACCCTCCCACTCCCCAGTcgagaagattttttttctttctttcttaattgtaattatattcC
>XM_034300043.1
CTAGGAACCATGGCTAAGTTTGTTCTAGCAGGAAAGGCAGATTGTCCTTATTATGCCAAAGCTGAGCTTCTAGCAGATTTACTGCAAAGCATCCTTCCTGATTTCCACATTCACAAGCTCTGCATGCTGCCTGATGCCTGGGAGAGCTGGCTTCAGGACACATGCTCACGCAACGGCTGGAAGCACGAGAGCAGCCCCATGGTGTGGAGGGAGCTGACCGACCGTGGAGGAAAGGGCGTGCTTCTCGGGGGGTTCAGTGATTTTCTTGAATATGTGCAGGGCTACTATGGTATCACGTCAGACATGGGCACAGAGCTGATGCTGAACATCGCAGCAGAAAATCTTCAGGCAGCGCAACTACACCTTCAGGATGAAGAGCGACGAAGCAAACTCCACCAATCCTTCCACATCTGGATCAGCAGTGCTCTAAACCCTATCTGCTACCACCTCGTCCCGTTACTCTTCACGTCCGGCGTATTCGCCGCCGTCCCCACCGTCAGCCTCCACCTTCTGGACGTAGACGCCAGTGAAGACTCTCTATCGGCTCTTAAAATGGACGTGGAGGACATGGCTCTGCCGCGGCTCCGCAGAGTCACCGCCCACTCCGACCCGCGTCAGGCATTCCAGTCAGCCGATCTGATCATTTTCCTGGACGATCAGGGAGCGAATGAGGACGCGGAGCAGCGGCTGAGCCAAGTGGTGCAAAGATTCACTCACTACGGATGTCTGATCGAGGACGACGCGCATAAAGAGCTGCGAGTGCTGGTGGCAGGAGACGTCTACGTCAACCTGAAGTGCGGTCTCCTGATCGAGAACGCGCCCTCCGTGGATCCACGTCGCTTTGTGGCGATCGCAGCACAGCTGGAAGGAGAAGCGAGGACTCAGCTTGCAATCCAGCTGTCTGTGAAAAGCCAAGATATCACTGATGTCATCGTTTGGGGAAACATCAGTGGTCATTTCCACATCGACCTACAGCGAGCTAAGGTTTACAGCTATAAAGGTGCCATCTGGGGACCTGCAGGATTCTCTCAGAGCGTCTTGGAGATGGTTTATgatagGAAATGGCTGAAGAACGACTTTCCAAGCTTGGTTGGCTCGCGTCGAAGCGCCATTTCTCAAATGACTAACAGACCTGCAGCTATTTCAGCAACCAGAGGAATCGTTACAGCTCTGAACGCGTGGATCAACGATTCCTCTCCTCAGGAGATCTTCTCAGTGGGTGTAGTCAGTACGGGGCACTTCGGTGTTCCTGCCGGTCTCGTGTTTTGCGTTCCCGTGACCTTCCAGGAGGGCGAGTGGTCGGTGTGTTCAGACGTCATCATCCCCGAAGAGCTGCGGAGGAAACTGGAGGCTGCCGTTAATGAGATCACAGAGGTGAAGAAgcgaaaaaacaaacaaacaaaaaaacaacacaaagttcactggttatattaataattcatatgTTTAGCACTTCATCGTGTGTattctgtgtacattttattgcTTGCAGGAAAAGACCATGGCAGATGGAATAAGGATGAAAAGTTCTGTTGCCTGAAATcatatttcat
>XM_034300044.1
CTAGGAACCATGGCTAAGTTTGTTCTAGCAGGAAAGGCAGATTGTCCTTATTATGCCAAAGCTGAGCTTCTAGCAGATTTACTGCAAAGCATCCTTCCTGATTTCCACATTCACAAGCTCTGCATGCTGCCTGATGCCTGGGAGAGCTGGCTTCAGGACACATGCTCACGCAACGGCTGGAAGCACGAGAGCAGCCCCATGGTGTGGAGGGAGCTGACCGACCGTGGAGGAAAGGGCGTGCTTCTCGGGGGGTTCAGTGATTTTCTTGAATATGTGCAGGGCTACTATGGTATCACGTCAGACATGGGCACAGAGCTGATGCTGAACATCGCAGCAGAAAATCTTCAGGCAGCGCAACTACACCTTCAGGATGAAGAGCGACGAAGCAAACTCCACCAATCCTTCCACATCTGGATCAGCAGTGCTCTAAACCCTATCTGCTACCACCTCGTCCCGTTACTCTTCACGTCCGGCGTATTCGCCGCCGTCCCCACCGTCAGCCTCCACCTTCTGGACGTAGACGCCAGTGAAGACTCTCTATCGGCTCTTAAAATGGACGTGGAGGACATGGCTCTGCCGCGGCTCCGCAGAGTCACCGCCCACTCCGACCCGCGTCAGGCATTCCAGTCAGCCGATCTGATCATTTTCCTGGACGATCAGGGAGCGAATGAGGACGCGGAGCAGCGGCTGAGCCAAGTGGTGCAAAGATTCACTCACTACGGATGTCTGATCGAGGACGACGCGCATAAAGAGCTGCGAGTGCTGGTGGCAGGAGACGTCTACGTCAACCTGAAGTGCGGTCTCCTGATCGAGAACGCGCCCTCCGTGGATCCACGTCGCTTTGTGGCGATCGCAGCACAGCTGGAAGGAGAAGCGAGGACTCAGCTTGCAATCCAGCTGTCTGTGAAAAGCCAAGATATCACTGATGTCATCGTTTGGGGAAACATCAGTGGTCATTTCCACATCGACCTACAGCGAGCTAAGGTTTACAGCTATAAAGGTGCCATCTGGGGACCTGCAGGATTCTCTCAGAGCGTCTTGGAGATGGTTTATgatagGAAATGGCTGAAGAACGACTTTCCAAGCTTGGTTGGCTCGCGTCGAAGCGCCATTTCTCAAATGACTAACAGACCTGCAGCTATTTCAGCAACCAGAGGAATCGTTACAGCTCTGAACGCGTGGATCAACGATTCCTCTCCTCAGGAGATCTTCTCAGTGGGTGTAGTCAGTACGGGGCACTTCGGTGTTCCTGCCGGTCTCGTGTTTTGCGTTCCCGTGACCTTCCAGGAGGGCGAGTGGTCGGTGTGTTCAGACGTCATCATCCCCGAAGAGCTGCGGAGGAAACTGGAGGCTGCCGTTAATGAGATCACAGAGGAAAAGACCATGGCAGATGGAATAAGGATGAAAAGTTCTGTTGCCTGAAATcatatttcatttcttaaatCTCTTGAAGGAGCGTCGCAGTAAAATGGACGATTATTTATTATCGAAAATAAATGCCTGCTTCACTGTGAaagatttctttatttatc

Function


symbol description
mdh1b Predicted to enable L-malate dehydrogenase activity. Predicted to be involved in NADH metabolic process; dicarboxylic acid metabolic process; and tricarboxylic acid cycle. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human MDH1B (malate dehydrogenase 1B).

NR:

description
putative malate dehydrogenase 1B isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU437804 True 2614 lncRNA 0.35 3 1824204 1827064
XM_034300043.1 False 1553 mRNA 0.52 8 1826242 1832729
XM_034300044.1 False 1532 mRNA 0.52 9 1826145 1832729

Neighbor


gene id symbol gene type direction distance location
pard3ba pard3b coding downstream 85269 1618820 ~ 1738935 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 305833 1512321 ~ 1518371 (-)
LOC113535431 LOC108258373 coding downstream 458298 1355723 ~ 1365906 (-)
slc5a10 slc5a10 coding downstream 578163 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 633656 1167628 ~ 1190548 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 62319 1895048 ~ 1909374 (-)
klf7a LOC108258322 coding upstream 82934 1915663 ~ 1937075 (-)
LOC117596168 NA coding upstream 423692 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 428560 2261289 ~ 2271653 (-)
LOC113535598 LOC108258873 coding upstream 450062 2282791 ~ 2331670 (-)
G369573 NA non-coding downstream 700 1785553 ~ 1823504 (-)
G369596 NA non-coding downstream 18902 1803109 ~ 1805302 (-)
G369523 NA non-coding downstream 235554 1538077 ~ 1588650 (-)
G369506 NA non-coding downstream 249539 1492699 ~ 1574665 (-)
G369305 NA non-coding downstream 427299 1396604 ~ 1396905 (-)
G369617 NA non-coding upstream 20620 1853349 ~ 1853782 (-)
G369618 NA non-coding upstream 21711 1854440 ~ 1854653 (-)
G369641 NA non-coding upstream 55775 1888504 ~ 1889374 (-)
G369663 NA non-coding upstream 185986 2018715 ~ 2021315 (-)
LOC117596194 NA non-coding upstream 282849 2115578 ~ 2144451 (-)
G369586 NA other downstream 28980 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 212538 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 547391 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 875401 869759 ~ 948803 (-)
G369125 actb other downstream 908521 911553 ~ 915683 (-)
LOC113535702 mx1 other upstream 734028 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 1010483 2843212 ~ 2853211 (-)
G370658 NA other upstream 3010600 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3556175 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3697263 5529992 ~ 5547032 (-)

Expression



Co-expression Network