G369586


Basic Information

Item Value
gene id G369586
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1776319 ~ 1795224 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437816
TTGTTTTTGTCAAAATTCTATCTAACTACAAGTACTTACTTGTAGGAGCAAGAAGCAGTTATTGTAAATTTTCAGTAACTATCAACTGACTTGCGagttgccttttaaggaaaagaggTGGAGCTAAACAGCTCTGTTGCGActagggggcggggctaatttCCAGAAATTTTTACCTGGAAAcctgaaataaagaaagtagGCAAATCTATTCCAGCTTTCTAAGGTATCTCTGAAATCATCACATATGATAATCACATAAtctgttgtttaaaaatgattataatttgaAAACAATAAGTACAGAAACTTCAGACGATACTTTTATCCAATCAAATCCTTTATTCATCTTCAAGCTGTATAACAAACAAGAAGAACCGGCATGCAGTCTCGACTAATAGTTCATaaccaaagcaaacaaaaaaagttggCTAGATTTATTTAGCTATTGTTTACGAAAATAGAATTAGCGACCTTTTTCCAGAACAGAACTTCCAAAGCTTTCCTCAGTCTAACGTAACAGCTCGCATGTTAGCGCTCTCGAAATTTAACGTTGTTTGTTGCTCTGTTCCATACGCTACAATTTACGTCTGTGTACATGTtttagtagaaaaaaaaaaaacgttaaatCGATTCTACTAAAACATCCTGATAGAAGTTCCTACGGCTGACGTGAGAACACGTCAGCTTTagcgtcctgaagtgttttattccaattTGCCATCAACTACAATTTTTAACGTATCGATGAGCGACACGTAATAGCCTACAATaaatccatttctagttacattacGCTATAATTTCGCTACTTACGTTACAACCGCTATAAAGAGTCGTTCTCTCAACAGCCTCCTTTTTCCTTTCGTCTTAAAACctcagcttgtcacgttaccgaAAAACCGAAAAGCGTaaacaccggagactccttccataaactttaaataaacgtctccttacagaaaacttcacgaTTATACGTTTCTCTTTGTTAAAATAACAccacgttattattattattattattactcttattattattagccttagattacaTATAGCGTCCGCCGTACAAgtcctgttactatagaaacgataacgtattcgaACGAGCcggcgctactgtcagagctgcggttataggaaatcaATCGCGTTCTAACCAATCgaaatcgagaattcaacagtgctgtggtacagATGTAACATCCTAATCCTAGAGGTCGTTCTTGTTTAGCATCTCAGTCAGGTTATAACTTATCGGAATACTCGCTAGGCTATTAGCAAGCTACTTCTAGGCTAGAAAAGTGCGCAACGTTTCTCCGTGACTTTATTTGACTTGCAGTGAAGTTCGGGATCCAGCCACTGAGTCACCTGATCGTCTAacaagctcaaaaaaaaaaaaaaaactctttcgATTTAATACTTGCCCCTCAGTGTTCTTGACTTGTCCAGGGCTTCAATGCAACAtagactgttaaaaaaaaaaaaaacacacactgcaggaacACACCATGAAAGCTCACACAACTCTTCTGAGCTGATGCTTCACCCAGATTGTCGTTAAACTCCAAAAACGactttacaataaaagagtatcaATTGTCAAGAATTTCCACCCACGCAGCGACACTCTTTCACAGGCAGGGGGCGATGTAAATGTTTCGATCCTCACCTCAAGAGCAATAACACCATAATACCAAACCTTTACCAAAAAGCCTTACACGCTCTTTCTTATGTCATTTCAAttttcttaaatgtttttttttagctaaaaaaaacaaacaaacaaaaacccaaaaTCACCAAAACAGGTTTGAAAACTTACATGAGGAAGAACATTTGGAGGCACAGATTCGAAGGAACGACACGCAAGATCGCTGAAGATGATGGACTCGGTTGCCAAATTCTTCTCCGTTTCAAGAgcttaattgttttgttttttttgtttttaaaaaaatctatcaaaaaaaaatctgaatcttTATCATCTGTATCAatgcaaaaatatatgtaatatttattcgttttattttatatcagtgCTTTTAATCGGGAACTAAACGtagaagccattttgttttacgcgatttaaaaatatacaaaagatTAGACGGGGGATTCTGGGAGTAATCTGGCAACTCGAGTGCTTTTTTGAATCTCTGAAATTATTGGTAGTGATTTATATAACTTaagtttgtaatttattttatgtatgttatattttttaatcgTAAAAACGTCAGCTCAAACTAGCCAAAAAATGTAAGGATTAACTTGAAATTCAAATTTCCTTTGAATTGTTCGTCAAGTTTTAAAACGTTTTCTTCACAAacgtggatttttttttttccagcttcaTTAACACACTCTTTACTCAAACTCCACCCTCCACCCTCGCGTGATCAAAGTGCTTTTATATATAGAGAAGGTGTTAAACATACAAAatcccaccaaaaaaaaaaaaaaaacaccaacattacaAACGTTGAAAGACAATCTCACGGTCTCTAAGTCGGTATGAGGAGAACCTGCGCTTTCCCATAAGGCATTGCAGCTTCGGGGCAGCAGCTGTGTCTGTGAAAAGCGGCGAGCGGACTCGGGAGGAAAGGCGACTGAGCGAGGAGATCGTGGGAGGAGAACCAGGCGAACGAGGTGGCGTTCTGAGCGCCGCACACGTGAAGCTCCGTCGGCTGGGCGTCCGAATGAACGAGAGCGGAGAGGAGCGAGCTCCACAGAGAGAGGGCGGAGTTCGGGTGGAGGGGAGGAGCAGAACTCGGGCCGTGACGGTGTCGGGGATGGTGCTGGTGGAGATCCGGAGCGTGTTCGGGTTTTTGGGTGGCGTTGGCGAGGACGCAGCAGCGAGGATGGAGCGACGAGGCCGAGGCGTGAGGATGGAAGAGGGCGGGGTTTACGGGGTCGGCGTGCGGGAGGTTGAGCTGGTGAAGAGCCGCGGACGCGGCGAGGAGACCGGTGACGCTCGTTAGGTACAGGAGACCGAGCATA
>TU437818
TTGTTTTTGTCAAAATTCTATCTAACTACAAGTACTTACTTGTAGGAGCAAGAAGCAGTTATTGTAAATTTTCAGTAACTATCAACTGACTTGCGagttgccttttaaggaaaagaggTGGAGCTAAACAGCTCTGTTGCGActagggggcggggctaatttCCAGAAATTTTTACCTGGAAAcctgaaataaagaaagtagGCAAATCTATTCCAGCTTTCTAAGGTATCTCTGAAATCATCACATATGATAATCACATAAtctgttgtttaaaaatgattataatttgaAAACAATAAGTACAGAAACTTCAGACGATACTTTTATCCAATCAAATCCTTTATTCATCTTCAAGCTGTATAACAAACAAGAAGAACCGGCATGCAGTCTCGACTAATAGTTCATaaccaaagcaaacaaaaaaagttggCTAGATTTATTTAGCTATTGTTTACGAAAATAGAATTAGCGACCTTTTTCCAGAACAGAACTTCCAAAGCTTTCCTCAGTCTAACGTAACAGCTCGCATGTTAGCGCTCTCGAAATTTAACGTTGTTTGTTGCTCTGTTCCATACGCTACAATTTACGTCTGTGTACATGTtttagtagaaaaaaaaaaaacgttaaatCGATTCTACTAAAACATCCTGATAGAAGTTCCTACGGCTGACGTGAGAACACGTCAGCTTTagcgtcctgaagtgttttattccaattTGCCATCAACTACAATTTTTAACGTATCGATGAGCGACACGTAATAGCCTACAATaaatccatttctagttacattacGCTATAATTTCGCTACTTACGTTACAACCGCTATAAAGAGTCGTTCTCTCAACAGCCTCCTTTTTCCTTTCGTCTTAAAACctcagcttgtcacgttaccgaAAAACCGAAAAGCGTaaacaccggagactccttccataaactttaaataaacgtctccttacagaaaacttcacgaTTATACGTTTCTCTTTGTTAAAATAACAccacgttattattattattattattactcttattattattagccttagattacaTATAGCGTCCGCCGTACAAgtcctgttactatagaaacgataacgtattcgaACGAGCcggcgctactgtcagagctgcggttataggaaatcaATCGCGTTCTAACCAATCgaaatcgagaattcaacagtgctgtggtacagATGTAACATCCTAATCCTAGAGGTCGTTCTTGTTTAGCATCTCAGTCAGGTTATAACTTATCGGAATACTCGCTAGGCTATTAGCAAGCTACTTCTAGGCTAGAAAAGTGCGCAACGTTTCTCCGTGACTTTATTTGACTTGCAGTGAAGTTCGGGATCCAGCCACTGAGTCACCTGATCGTCTAacaagctcaaaaaaaaaaaaaaaactctttcgATTTAATACTTGCCCCTCAGTGTTCTTGACTTGTCCAGGGCTTCAATGCAACAtagactgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437816 True 3006 TUCP 0.40 2 1792187 1795224
TU437818 False 1515 lncRNA 0.36 2 1776319 1795224

Neighbor

gene id symbol gene type direction distance location
pard3ba pard3b coding downstream 37384 1618820 ~ 1738935 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 257948 1512321 ~ 1518371 (-)
LOC113535431 LOC108258373 coding downstream 410413 1355723 ~ 1365906 (-)
slc5a10 slc5a10 coding downstream 530278 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 585771 1167628 ~ 1190548 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 99824 1895048 ~ 1909374 (-)
klf7a LOC108258322 coding upstream 120439 1915663 ~ 1937075 (-)
LOC117596168 NA coding upstream 461197 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 466065 2261289 ~ 2271653 (-)
LOC113535598 LOC108258873 coding upstream 487567 2282791 ~ 2331670 (-)
G369523 NA non-coding downstream 187669 1538077 ~ 1588650 (-)
G369506 NA non-coding downstream 201654 1492699 ~ 1574665 (-)
G369305 NA non-coding downstream 379414 1396604 ~ 1396905 (-)
G369297 NA non-coding downstream 379721 1370134 ~ 1396598 (-)
G369302 NA non-coding downstream 390657 1384921 ~ 1385662 (-)
G369596 NA non-coding upstream 7885 1803109 ~ 1805302 (-)
G369617 NA non-coding upstream 58125 1853349 ~ 1853782 (-)
G369618 NA non-coding upstream 59216 1854440 ~ 1854653 (-)
G369641 NA non-coding upstream 93280 1888504 ~ 1889374 (-)
G369663 NA non-coding upstream 223491 2018715 ~ 2021315 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 164653 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 499506 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 827516 869759 ~ 948803 (-)
G369125 actb other downstream 860636 911553 ~ 915683 (-)
prkcba prkcb other downstream 1073974 653453 ~ 702345 (-)
mdh1b mdh1b other upstream 28980 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 771533 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 1047988 2843212 ~ 2853211 (-)
G370658 NA other upstream 3048105 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3593680 5388904 ~ 5395012 (-)

Expression


Co-expression Network