G369596


Basic Information

Item Value
gene id G369596
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1803109 ~ 1805302 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437828
TTTAGATTTTACTTACTATCACATCAAATCTTGAGTAAAGAGCCACTACCTTACCTAGAAAACAGaaaatcttaataataataataataataataataatactagaatatgtatattaatttTGCTTGATGTCTTTGAGTCGAGAATGTGTTACCATTTTCATCCACCACAGGCAGAGCAGATACTCGTCTCTCCACAAAAATGGATAAAGCGTCGTACACGGTGGCCGTCTCCTGTATGGTGGCAATGTCTCTGAATGTCCCGACTCCCGCTTCTTCAATTGTCCTCTGCAGAAATTGTGGCGTTGGGATCGTGGCTCTCTGCACATAACAAAATGCCGGCCAGAGGCAGGTGGACGTGAGCGCGAAATTGTCTTTATTAGGGCTGTACATGATTATAGAGCAGGACCTTAGGTAGTGACATGCACTGTTAACATTCTATACTCAGGAATCACTGGGAAACCCTTAGAAAACTGGGAAACCAGGAAGTGACTGGGAAAGGAGAAGGCCTACTAGAAACAAAGAAACCACTGAGAAGCCAATAAAACACTAGAAGGTACTGGGTAGCCAAGAAACCACTGGGAAAGCTAAAAGGCACAGGGAAAACTAAAGGCCACTGGGAAAGCAGGAAGCCTCTGGAAAAACTAGCAGGTACAGCGAAGCCAAGAAAACAACAGGGAAAGTTCAAAAACAATGGGAAGACTGAAGGGCACTGGTAAACCAGGAAGCCACTGGGAAACCAGAAAGTCTTATGGAACCAGGGAAGCTACTGGGAAAACAGGTAAGTATTATGAAGCCAAGAAACCACTGGGAAAGCTTAAAAATCACGGGGAAACCAACAAACCACTGGGAATTCCTAGTAAAGCTAAAAGGCACAGGGAAATCAGGAAGCCATTGAAAAAAGTAGCAGGTACTGGGAAGCCGAGAAACCACACGGAACTCTAAAACCAGAAAGCCACTGGGAAACTAGCAAACCACGCAGAAAACCAAAAGCTACACGGAAAACAGGAAGGTACTGGGATGTCAAGAAACCACTTGGACAACCAATGGCCAATGGGAAAACAGGTAGGTACATGGTGGGGGGGATCTGAAGGCCACTGGAAAATTAGAATGCCACTGGGAAAACAGGAAGTCACTGGAAATCCAGGAAGGTACTGGGAAGCCAGGAAACCTCTTGGACAACAAATAGTCACTAGGAAAACAGGTAGGTATATGGAAGCCAAGAAACCAATGGGAAACCAAGAAGATTTGTGGGCAAAGGAAAATTAGAAAGCCACTGGGAAACCAGGAAGCCACTGGGAAACCAGTAAGGCACTGGGAggctaaaaaaattttaaataagtttaaaatacCTGTTAACACATGCAACACTTTCCAATGATACAGTCAACCAAACTAATATTTATAAACAGGATAAACAGGATAAAGCTAGACACAGGAAATAACAATTATGAGGGGGTGTGGTCAAGATAGTCTTGGAGTAGGAACTGGGGaaaccaggaagtaaacaggaagtttTCTGCGACACTGCAATCTCAAAATACTAAGGGCAGGGCAAGGAATGAGGATAAAATTATAATGACGATAAACGAAAATGGTCTTACTAACAAATATATACAGGAATTTGAGAATTCGCTTGTGGGTTAAAATGTGGAGGACGTTCCCAGATTCGGGGTCGATGACAGGCAGACGGTGGATTTTGTGcttcagtaaggaataaacggCATCGAAAAGGCTGTGAAAGAAACGAGAATTAGAGGCGTAAAACTTTACACTCGCactcttgtttttgttgttggaaTCTTGTGGAGTGTGAGCTGTAGTTACCTCGCTTCAGGTGTGATGCTGATGAGGCTCGGATTATAGTACTGCAGGTAAATgtctaaaaagtaaaaaaaaaaaaaagaaaaactgtaaaacatatatagcctataaaataaataaatctatataacCATCAGCATGAAGTTTAACACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437828 True 1977 lncRNA 0.42 2 1803109 1805302

Neighbor

gene id symbol gene type direction distance location
pard3ba pard3b coding downstream 64174 1618820 ~ 1738935 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 284738 1512321 ~ 1518371 (-)
LOC113535431 LOC108258373 coding downstream 437203 1355723 ~ 1365906 (-)
slc5a10 slc5a10 coding downstream 557068 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 612561 1167628 ~ 1190548 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 89746 1895048 ~ 1909374 (-)
klf7a LOC108258322 coding upstream 110361 1915663 ~ 1937075 (-)
LOC117596168 NA coding upstream 451119 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 455987 2261289 ~ 2271653 (-)
LOC113535598 LOC108258873 coding upstream 477489 2282791 ~ 2331670 (-)
G369523 NA non-coding downstream 214459 1538077 ~ 1588650 (-)
G369506 NA non-coding downstream 228444 1492699 ~ 1574665 (-)
G369305 NA non-coding downstream 406204 1396604 ~ 1396905 (-)
G369297 NA non-coding downstream 406511 1370134 ~ 1396598 (-)
G369617 NA non-coding upstream 48047 1853349 ~ 1853782 (-)
G369618 NA non-coding upstream 49138 1854440 ~ 1854653 (-)
G369641 NA non-coding upstream 83202 1888504 ~ 1889374 (-)
G369663 NA non-coding upstream 213413 2018715 ~ 2021315 (-)
LOC117596194 NA non-coding upstream 310276 2115578 ~ 2144451 (-)
G369586 NA other downstream 7885 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 191443 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 526296 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 854306 869759 ~ 948803 (-)
G369125 actb other downstream 887426 911553 ~ 915683 (-)
mdh1b mdh1b other upstream 18902 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 761455 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 1037910 2843212 ~ 2853211 (-)
G370658 NA other upstream 3038027 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3583602 5388904 ~ 5395012 (-)

Expression


Co-expression Network