G369617


Basic Information

Item Value
gene id G369617
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1853349 ~ 1853782 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU437849
gtgtgtaaaaaaaaaaatcctccaaaTAATAATTACCAGGCAAATATTCGGGTTTTTTTTGCCCCTTTAAATTGTGTAGCGCTCGAGCGTCCTCTTTCTGGCCTCCTTCATTCAGTGCGCGCGCGGGGAATCCGCCTCCGCGCTCGCGCACGTTCAAGGCGTCAGCTGAGATGAGAAAACGacgggtttttttttgttgttgttattgttattgttgttgttttgttttgtttttttacatagCTGAATGTCCGTCCGCGTTTGTTAAAGACACTCTCATCCGTAGCCGTTCCGTTTACGCCCaacgagaaaaaaaataataaataaaattaaataaaataaaaaaaaatccctcactCCATATGAAGAACCCGTATGTGCGCGTGCGGAAAGCGTCTCGAGTCGAGAACCGGAATGTTACGTTTCCTCAGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU437849 True 434 lncRNA 0.43 1 1853349 1853782

Neighbor

gene id symbol gene type direction distance location
pard3ba pard3b coding downstream 114414 1618820 ~ 1738935 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 334978 1512321 ~ 1518371 (-)
LOC113535431 LOC108258373 coding downstream 487443 1355723 ~ 1365906 (-)
slc5a10 slc5a10 coding downstream 607308 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 662801 1167628 ~ 1190548 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 41266 1895048 ~ 1909374 (-)
klf7a LOC108258322 coding upstream 61881 1915663 ~ 1937075 (-)
LOC117596168 NA coding upstream 402639 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 407507 2261289 ~ 2271653 (-)
LOC113535598 LOC108258873 coding upstream 429009 2282791 ~ 2331670 (-)
G369573 NA non-coding downstream 29845 1785553 ~ 1823504 (-)
G369596 NA non-coding downstream 48047 1803109 ~ 1805302 (-)
G369523 NA non-coding downstream 264699 1538077 ~ 1588650 (-)
G369506 NA non-coding downstream 278684 1492699 ~ 1574665 (-)
G369305 NA non-coding downstream 456444 1396604 ~ 1396905 (-)
G369618 NA non-coding upstream 658 1854440 ~ 1854653 (-)
G369641 NA non-coding upstream 34722 1888504 ~ 1889374 (-)
G369663 NA non-coding upstream 164933 2018715 ~ 2021315 (-)
LOC117596194 NA non-coding upstream 261796 2115578 ~ 2144451 (-)
LOC117596130 NA non-coding upstream 332864 2186646 ~ 2187942 (-)
mdh1b mdh1b other downstream 20620 1824204 ~ 1832729 (-)
G369586 NA other downstream 58125 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 241683 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 576536 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 904546 869759 ~ 948803 (-)
LOC113535702 mx1 other upstream 712975 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 989430 2843212 ~ 2853211 (-)
G370658 NA other upstream 2989547 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3535122 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3676210 5529992 ~ 5547032 (-)

Expression


Co-expression Network