Gene
RNA
| Item | Value |
|---|---|
| gene id | G369641 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 1888504 ~ 1889374 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: 60S ribosomal protein L12 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU437880 | True | 283 | lncRNA | 0.52 | 2 | 1888504 | 1889374 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pard3ba | pard3b | coding | downstream | 149569 | 1618820 ~ 1738935 (-) |
| en1b | en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 | coding | downstream | 370133 | 1512321 ~ 1518371 (-) |
| LOC113535431 | LOC108258373 | coding | downstream | 522598 | 1355723 ~ 1365906 (-) |
| slc5a10 | slc5a10 | coding | downstream | 642463 | 1204764 ~ 1246041 (-) |
| LOC113535776 | LOC108258401 | coding | downstream | 697956 | 1167628 ~ 1190548 (-) |
| LOC113535707 | LOC108258365,LOC108437114 | coding | upstream | 5674 | 1895048 ~ 1909374 (-) |
| klf7a | LOC108258322 | coding | upstream | 26289 | 1915663 ~ 1937075 (-) |
| LOC117596168 | NA | coding | upstream | 367047 | 2256421 ~ 2259148 (-) |
| LOC113535651 | NA | coding | upstream | 371915 | 2261289 ~ 2271653 (-) |
| LOC113535598 | LOC108258873 | coding | upstream | 393417 | 2282791 ~ 2331670 (-) |
| G369618 | NA | non-coding | downstream | 33851 | 1854440 ~ 1854653 (-) |
| G369617 | NA | non-coding | downstream | 34722 | 1853349 ~ 1853782 (-) |
| G369573 | NA | non-coding | downstream | 65000 | 1785553 ~ 1823504 (-) |
| G369596 | NA | non-coding | downstream | 83202 | 1803109 ~ 1805302 (-) |
| G369523 | NA | non-coding | downstream | 299854 | 1538077 ~ 1588650 (-) |
| G369663 | NA | non-coding | upstream | 129341 | 2018715 ~ 2021315 (-) |
| LOC117596194 | NA | non-coding | upstream | 226204 | 2115578 ~ 2144451 (-) |
| LOC117596130 | NA | non-coding | upstream | 297272 | 2186646 ~ 2187942 (-) |
| LOC117596129 | NA | non-coding | upstream | 309651 | 2199025 ~ 2245158 (-) |
| LOC113535806 | NA | non-coding | upstream | 453739 | 2343113 ~ 2345533 (-) |
| mdh1b | mdh1b | other | downstream | 55775 | 1824204 ~ 1832729 (-) |
| G369586 | NA | other | downstream | 93280 | 1776319 ~ 1795224 (-) |
| nrp2a | nrp2,LOC107556288,LOC107749808,LOC107750056 | other | downstream | 276838 | 1538453 ~ 1611666 (-) |
| G369242 | LOC108258881 | other | downstream | 611691 | 1276021 ~ 1276813 (-) |
| G369125 | actb | other | downstream | 972821 | 911553 ~ 915683 (-) |
| LOC113535702 | mx1 | other | upstream | 677383 | 2566757 ~ 2574471 (-) |
| LOC117596167 | NA | other | upstream | 953838 | 2843212 ~ 2853211 (-) |
| G370658 | NA | other | upstream | 2953955 | 4843329 ~ 4889381 (-) |
| LOC113537294 | NA | other | upstream | 3499530 | 5388904 ~ 5395012 (-) |
| LOC113537235 | son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 | other | upstream | 3640618 | 5529992 ~ 5547032 (-) |
