G369907


Basic Information

Item Value
gene id G369907
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2520498 ~ 2522127 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU438184
GGGTTTATTTGCACAGATCAGGCAGAGCAGATCAGAGGCCCCTGGTCCAGTGCTAGAAGCAGAATATCCAACATAACTGCAGTCTAAATTGTTTTGCAGTATGAAACCATCAGTGATGGTTGATGAAACCATCAGTGATGCCTGCCACAATTGCTTGTCTTGCATGTGCCACAGAGCCCAAACATGGGTGAGCTGGGACTTGCCTGAATCTCAAACGAAAGCTGTCAAATACTTGCACTGTGGCAAAGCACACTCCACTGTCACAGGATAGCTGCTATCACAGATAGCTTAGAGCCTATCATTGGTGCACATGAGCTGGATGTGGCAGAACCAGACCTCTCCTCAGACACTGCTGAGATTGCAGTTTAAAGGTCATTATCAGCCTGCAAGAACTTCCTCAACCAGCAGTTAACGTCTGTACACATCATCTGAATGCAAGTGTAGCTCCTGCTTTTCTGTTACCCAGATTGACTAGAAAGAGTCAACTGACCTGGGTTTGGTTTTCCAGAACTAGAAAAAAGAGATACCTGTGGAAGGTCTCTGTTGAAGCTTGAGGGAGAGCACTTGTTATGAGAGCACTCAGGCTTAAATTTTATGCTGGTTGGTTCTGGCGTTCCAAATTTATGCAGCCCCAGAGCAACAGACCCACGATTTCTGTGCACTTCGGACAGGCATGGTCATGCGGAGTGCCAAGCTGTTAAGTGCCATGCCCGACTTGTCGAGAGAGACAAGCTTCTCAATTTTTTACACAGGTGTTTTTACACAGGTGTCTCTGGGTCTGTGTGGCCAAGTTCCTTCTTGCTCAGCCGTTTTCAGTTATCACTGTGGTTTGTAAAGGAATGCTTCCTAAAAGCCAGGGTTTCAGGCACTGCAATTTTCATGTCGTCACAGCTCGACTATGATTACTTGTTGTTGTGAAGTCCTTGTATCATCCTGCTGGGGTTGCTCGAGGGCCTTGGCAGAGCACTATGAATTTAAATTTGACCCTCTTCTTAAGGAAGTGAAAATCATAAAAGTCCTTTATCCTGATGTCTATCATGCAAAGAAACTGCCAGATCAAGTTATTAAAATTTGATCCCTTCACTGTCTCAACAATAAGCCTCGCAGTCCACAAGAGTATGAAAGGAGGGATGAAGTGCAGGATGAATACTAATGTACTATCGAATATTCTTCATTCTGGGGTCAAAATCTCTCAAAATCCCTCAGTGGATAAagttcagctgtgtgtgtcccATAACCTAAAATGAACAGCTTTATGCATTGTTAGCAAAATCCATCTAGACATTTAGCTGAATGCCAAATGGCCCTCTTCTTCAAAACTtggaataaaagacaaaaggGGTTTGTCTCCAACAAGCCTAAATGTACAGTTTTTAAACATTATCCTTACAAATAAACCCAGACACCTAGTCCTGCATGATTAGTATAATGCCACATAGCTGTTTTAGGCAGAGACATCATTTGGATAAAATgtgaaacaaataaatgataAGGATAGctatttctttgtgttttatcttaaataacagtatgtataaatgtattcaCTGTGCATTAAAGCTAAATGGTTGACTTCATGTTGTAATATAGCTTTTGATGAGTGCTGCATGGTCATGAATGAAAATTGGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438184 True 1630 lncRNA 0.42 1 2520498 2522127

Neighbor

gene id symbol gene type direction distance location
LOC113535442 LOC108258868,LOC108258869 coding downstream 5480 2501030 ~ 2515018 (-)
LOC113535761 NA coding downstream 169509 2347228 ~ 2350989 (-)
LOC113535598 LOC108258873 coding downstream 188828 2282791 ~ 2331670 (-)
LOC113535651 NA coding downstream 248845 2261289 ~ 2271653 (-)
LOC117596168 NA coding downstream 261350 2256421 ~ 2259148 (-)
LOC113535562 LOC108258657 coding upstream 988 2523115 ~ 2542866 (-)
LOC113535812 mx1 coding upstream 53323 2575450 ~ 2583050 (-)
efnb2b LOC108259076 coding upstream 95499 2617626 ~ 2633096 (-)
cpo LOC108258336,LOC108440461 coding upstream 115208 2637335 ~ 2642686 (-)
atic atic,pur9 coding upstream 195930 2718057 ~ 2728695 (-)
G369891 NA non-coding downstream 9536 2510756 ~ 2510962 (-)
LOC113535806 NA non-coding downstream 174965 2343113 ~ 2345533 (-)
LOC117596129 NA non-coding downstream 275340 2199025 ~ 2245158 (-)
LOC117596130 NA non-coding downstream 332556 2186646 ~ 2187942 (-)
LOC117596194 NA non-coding downstream 376047 2115578 ~ 2144451 (-)
G369924 LOC107702554 non-coding upstream 33852 2555979 ~ 2558809 (-)
G369926 NA non-coding upstream 37086 2559213 ~ 2560060 (-)
G369928 pcnp non-coding upstream 38753 2560880 ~ 2562458 (-)
G369930 NA non-coding upstream 40677 2562804 ~ 2563537 (-)
G369927 NA non-coding upstream 42585 2564712 ~ 2565252 (-)
mdh1b mdh1b other downstream 687769 1824204 ~ 1832729 (-)
G369586 NA other downstream 725274 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 908832 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1243685 1276021 ~ 1276813 (-)
G369125 actb other downstream 1604815 911553 ~ 915683 (-)
LOC113535702 mx1 other upstream 44630 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 321085 2843212 ~ 2853211 (-)
G370658 NA other upstream 2321202 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2866777 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3007865 5529992 ~ 5547032 (-)

Expression


Co-expression Network