G369930


Basic Information

Item Value
gene id G369930
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2562804 ~ 2563537 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU438221
CATCGAAAACAGATGCAGGTTTTTTGGAGGGTAAAATGGGCGCCACTTCCTTCGGTTTCTGGAAAAGATTTACACGCTTCAGAGAGACGTCCGTGTCACATTTAAACCACAATCAACACTTAACGAAAACAGTGGAACATATCACTGAGTCAGCTGCTAGTTTAAGTCACAGGCCGAACtcaattagctagctagctaacggtTGCCTTAGCAAGATGCTCCAAAAATCTAGTTAGTTTGAATAATCAATTAAATATTATGattgctaaaaataaatatttaagcaaATGGTTAGAGTCAACTTGCAGAcataagcagtttttttttttctctttttttgagaTGTAGACAATGGCTATTTATCTCCTGCAGCCacttaaatgaagaaaaatcacTGGTCATAATATTGCAAAGTTTGTCCaggttacagaaaaaaaacgtGACTGAGCCGTCTGGAAACCGAAAGAGTCGACGATTATTACAGACATCAAAGAAAACGGAAACAAGCTAACATCTAAAAAGAGGACatgcttagctagctaacaagctgACTAGCTAGCAACatcacattttaacatttacatatgCGATATAAAAACCTTGAAGCGTAACATCTAAACAATTCGCTCATTCAGTGAGTCGGTTCATCTGGCTCAGCTCACCATTATGAGCTGGACTGTGAcgtcattttgtttattatacGACAGAGTACGGATTTACGAAGCGATTCCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438221 True 734 lncRNA 0.38 1 2562804 2563537

Neighbor

gene id symbol gene type direction distance location
LOC113535562 LOC108258657 coding downstream 19938 2523115 ~ 2542866 (-)
LOC113535442 LOC108258868,LOC108258869 coding downstream 47786 2501030 ~ 2515018 (-)
LOC113535761 NA coding downstream 211815 2347228 ~ 2350989 (-)
LOC113535598 LOC108258873 coding downstream 231134 2282791 ~ 2331670 (-)
LOC113535651 NA coding downstream 291151 2261289 ~ 2271653 (-)
LOC113535812 mx1 coding upstream 11913 2575450 ~ 2583050 (-)
efnb2b LOC108259076 coding upstream 54089 2617626 ~ 2633096 (-)
cpo LOC108258336,LOC108440461 coding upstream 73798 2637335 ~ 2642686 (-)
atic atic,pur9 coding upstream 154520 2718057 ~ 2728695 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding upstream 183731 2747268 ~ 2757237 (-)
G369928 pcnp non-coding downstream 346 2560880 ~ 2562458 (-)
G369926 NA non-coding downstream 2744 2559213 ~ 2560060 (-)
G369924 LOC107702554 non-coding downstream 3995 2555979 ~ 2558809 (-)
G369907 NA non-coding downstream 40677 2520498 ~ 2522127 (-)
G369891 NA non-coding downstream 51842 2510756 ~ 2510962 (-)
G369927 NA non-coding upstream 1175 2564712 ~ 2565252 (-)
G369980 NA non-coding upstream 110018 2673555 ~ 2678270 (-)
G369988 NA non-coding upstream 130612 2694149 ~ 2694577 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding upstream 207716 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding upstream 211345 2774882 ~ 2775395 (-)
mdh1b mdh1b other downstream 730075 1824204 ~ 1832729 (-)
G369586 NA other downstream 767580 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 951138 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1285991 1276021 ~ 1276813 (-)
G369125 actb other downstream 1647121 911553 ~ 915683 (-)
LOC113535702 mx1 other upstream 3220 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 279675 2843212 ~ 2853211 (-)
G370658 NA other upstream 2279792 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2825367 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2966455 5529992 ~ 5547032 (-)

Expression


Co-expression Network