G369980


Basic Information

Item Value
gene id G369980
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2673555 ~ 2678270 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU438282
aaacaacaacctaaaaaaaagtaagaaggcgtgtgggcgtggcttgatttattcagaaatgagtggaaatattaacacaaaaatTAAACTGAGGCTACTCAACCACATTAGAATTGAAGATGGAAAATTGGTACACATTTGAGTTCAAATTCAGTATAAATTCTGATATAATTGGATATTCATAACAACATAAACGTGAATGCTGTGCATAGTTTTCATTCTCACCCGCAGGTTTGGATTCACACTGGACGCCGTCTGATCCACTGCACCTGCACAGTAACGTGCTGCCCATGTAGGCTCGCTCCCATTGGTCGTTGACTCGATAAGAACGCCCATTCTCTGTACAcACCTTGGCGTGTGTGTGGCAGCTGGTCCACCGGTATGTCCAGCACCTGCTGCAGCCCCTGTCGCTTATTCCTGCCGGTCTGCGGCACGCACACCACCGCGCTGCACGCGCACAGCGCCAACAGCACCAACCGCCTCATTCTCGCGCACagaaaaatactttatttaaaaatctaatttatcacaattatttttaaaaaataataattattattatttaaaaatatatatatattttgttgttggtgtttgGGGTGTATTCTCGGGGCGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438282 True 618 lncRNA 0.43 2 2673555 2678270

Neighbor

gene id symbol gene type direction distance location
cpo LOC108258336,LOC108440461 coding downstream 30869 2637335 ~ 2642686 (-)
efnb2b LOC108259076 coding downstream 40459 2617626 ~ 2633096 (-)
LOC113535812 mx1 coding downstream 90505 2575450 ~ 2583050 (-)
LOC113535562 LOC108258657 coding downstream 130689 2523115 ~ 2542866 (-)
LOC113535442 LOC108258868,LOC108258869 coding downstream 158537 2501030 ~ 2515018 (-)
atic atic,pur9 coding upstream 39787 2718057 ~ 2728695 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding upstream 68998 2747268 ~ 2757237 (-)
tuba8l2 tuba8l2,LOC108411703,LOC103042625,LOC107556293,LOC107750365,LOC100708793 coding upstream 80699 2758969 ~ 2767493 (-)
LOC113535758 LOC108257886 coding upstream 90359 2768629 ~ 2770657 (-)
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding upstream 118998 2797268 ~ 2804129 (-)
G369927 NA non-coding downstream 108303 2564712 ~ 2565252 (-)
G369930 NA non-coding downstream 110018 2562804 ~ 2563537 (-)
G369928 pcnp non-coding downstream 111097 2560880 ~ 2562458 (-)
G369926 NA non-coding downstream 113495 2559213 ~ 2560060 (-)
G369924 LOC107702554 non-coding downstream 114746 2555979 ~ 2558809 (-)
G369988 NA non-coding upstream 15879 2694149 ~ 2694577 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding upstream 92983 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding upstream 96612 2774882 ~ 2775395 (-)
G370028 NA non-coding upstream 105002 2783272 ~ 2790676 (-)
G370019 NA non-coding upstream 140333 2818603 ~ 2821314 (-)
LOC113535702 mx1 other downstream 99084 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 840826 1824204 ~ 1832729 (-)
G369586 NA other downstream 878331 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1061889 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1396742 1276021 ~ 1276813 (-)
LOC117596167 NA other upstream 164942 2843212 ~ 2853211 (-)
G370658 NA other upstream 2165059 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2710634 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2851722 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3263769 5942039 ~ 5952313 (-)

Expression


Co-expression Network