G370024 (LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800)


Basic Information

Item Value
gene id G370024
gene name LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2774882 ~ 2775395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU438346
GTTTCGGAGAGTGTTACCTGGAGGAAGTGGATGtgatcttgtgtgtgtgaaagctgctccagctcagtgactctcctctTAAGATCAGTgatctcctgctccagttgctcCAGGAGTCGTTCAGCTCGACGCAGTTCAGccttctcctgagctctgatcagctcCGTCACCTCCAAGCGCTTTTTCTCCATGAAGCTGATCATCTCAGTAAAGATAATCTCACTGTCCTCCACTGCTGTCTGAGCACGGGACTGTtaggaacCTTAATCATGTTCACAgcctgtttcagctcctgcaccttcttctgcttctcctggattCTCTGCTGGGATTTCAGCTGCTCCTCCTTTAGCTCCCTCTGAGCACAAATCACATATGCTCAGATGGTTGCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438346 True 395 lncRNA 0.50 2 2774882 2775395

Neighbor

gene id symbol gene type direction distance location
LOC113535758 LOC108257886 coding downstream 4225 2768629 ~ 2770657 (-)
tuba8l2 tuba8l2,LOC108411703,LOC103042625,LOC107556293,LOC107750365,LOC100708793 coding downstream 7389 2758969 ~ 2767493 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding downstream 17645 2747268 ~ 2757237 (-)
atic atic,pur9 coding downstream 46187 2718057 ~ 2728695 (-)
cpo LOC108258336,LOC108440461 coding downstream 132196 2637335 ~ 2642686 (-)
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding upstream 21873 2797268 ~ 2804129 (-)
LOC113535756 LOC108258552 coding upstream 32922 2808317 ~ 2811609 (-)
LOC113535483 LOC108258552,LOC108258561 coding upstream 48598 2823993 ~ 2827600 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding upstream 58218 2833613 ~ 2838789 (-)
LOC117596192 NA coding upstream 99513 2874908 ~ 2892085 (-)
G369988 NA non-coding downstream 80305 2694149 ~ 2694577 (-)
G369980 NA non-coding downstream 96612 2673555 ~ 2678270 (-)
G369927 NA non-coding downstream 209630 2564712 ~ 2565252 (-)
G369930 NA non-coding downstream 211345 2562804 ~ 2563537 (-)
G369928 pcnp non-coding downstream 212424 2560880 ~ 2562458 (-)
G370028 NA non-coding upstream 7877 2783272 ~ 2790676 (-)
G370019 NA non-coding upstream 43208 2818603 ~ 2821314 (-)
G370127 NA non-coding upstream 174026 2949421 ~ 2984930 (-)
LOC117596157 NA non-coding upstream 263779 3039174 ~ 3052202 (-)
G370207 NA non-coding upstream 294603 3069998 ~ 3072601 (-)
LOC113535702 mx1 other downstream 200411 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 942153 1824204 ~ 1832729 (-)
G369586 NA other downstream 979658 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1163216 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1498069 1276021 ~ 1276813 (-)
LOC117596167 NA other upstream 67817 2843212 ~ 2853211 (-)
G370658 NA other upstream 2067934 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2613509 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2754597 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3166644 5942039 ~ 5952313 (-)

Expression


Co-expression Network