G370028



Basic Information


Item Value
gene id G370028
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2783272 ~ 2790676 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU438351
TTTCTCCATGAAGCTGATCATCTCAGTGAAGATAATCTCACTGTCCTCCACTGCTGTCTGAGCACGGGACTGttaggaaacacacacaaaccacgcTTCCCTCTCTTACTATGACTCTGGATGACTGTTtgttcatgttgtgtgtgtgtttctaggagcagctctgtctctgctcactgctcacCTTAATCATGTTCACAgcctgtttcagctcc

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU438351 True 215 lncRNA 0.47 2 2783272 2790676

Neighbor


gene id symbol gene type direction distance location
LOC113535758 LOC108257886 coding downstream 12615 2768629 ~ 2770657 (-)
tuba8l2 tuba8l2,LOC108411703,LOC103042625,LOC107556293,LOC107750365,LOC100708793 coding downstream 15779 2758969 ~ 2767493 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding downstream 26035 2747268 ~ 2757237 (-)
atic atic,pur9 coding downstream 54577 2718057 ~ 2728695 (-)
cpo LOC108258336,LOC108440461 coding downstream 140586 2637335 ~ 2642686 (-)
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding upstream 6592 2797268 ~ 2804129 (-)
LOC113535756 LOC108258552 coding upstream 17641 2808317 ~ 2811609 (-)
LOC113535483 LOC108258552,LOC108258561 coding upstream 33317 2823993 ~ 2827600 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding upstream 42937 2833613 ~ 2838789 (-)
LOC117596192 NA coding upstream 84232 2874908 ~ 2892085 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding downstream 7877 2774882 ~ 2775395 (-)
G369988 NA non-coding downstream 88695 2694149 ~ 2694577 (-)
G369980 NA non-coding downstream 105002 2673555 ~ 2678270 (-)
G369927 NA non-coding downstream 218020 2564712 ~ 2565252 (-)
G369930 NA non-coding downstream 219735 2562804 ~ 2563537 (-)
G370019 NA non-coding upstream 27927 2818603 ~ 2821314 (-)
G370127 NA non-coding upstream 158745 2949421 ~ 2984930 (-)
LOC117596157 NA non-coding upstream 248498 3039174 ~ 3052202 (-)
G370207 NA non-coding upstream 279322 3069998 ~ 3072601 (-)
G370237 NA non-coding upstream 384468 3175144 ~ 3176945 (-)
LOC113535702 mx1 other downstream 208801 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 950543 1824204 ~ 1832729 (-)
G369586 NA other downstream 988048 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1171606 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1506459 1276021 ~ 1276813 (-)
LOC117596167 NA other upstream 52536 2843212 ~ 2853211 (-)
G370658 NA other upstream 2052653 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2598228 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2739316 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3151363 5942039 ~ 5952313 (-)

Expression



Co-expression Network