G370127


Basic Information

Item Value
gene id G370127
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2949421 ~ 2984930 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU438468
GGTACCATGTGCTAAAGGCCATGTAATAGCAAATGAAAAGAGCAGCTGAATAATGAGCAGCATAGAACTGAATTGTGAAGAGCGAGGAATCCATCATTGACGCTCCTCTGGCTGAGAGAGCACAAACCGCCCAATCGATACTCACCTGCCGAGCTGAAGGGCTTTCCGAGGATTAGATGTCAAACCTGCTGGGCCTATCTCTATGATAaactctgtgtgcatgtgtgcacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcttcagGCAGCAAGACTGAGCAATGATTCCTCTAGCAATCCTATTTGCTCTAGGCATCTTCTGCTAATCAGTTATGAATTTTAGGTTTGAATATTCAAGATGTACAATATGGTTATAATGAATGCttcaaaatattaattcattctgGAGAATGCTTGACTTCCGCATCCCTGAAGGGTTTGGACATATTTGAAGCAGTACGCATTCTTCTTGGAGAAGGAGCCTCCTCCTGAATGGAACGATAATGGGTTTAAGTCAGATTGTGGGTGGGGTTAAGGATGATGGATGAGGCTAGAGTAAGGCCAAGAGTGTGAGAGCTAGATTAAAGTATGAGACAGAGTTAGCATAAGGGGTGATGCTAGTGTGATGAGTGGGGTTAGAGTGAGGGGTGGGGTTCGAGTAAGGGGGTAGGTGTAGGGTACAATTAAAGCAAGGGCTGGGGTTCAAGAGCACAAGGAGTGGGATTAGGATGATGGACGGAGCAAGGGTAAGACCTGGAGTGTAAGGGGTGGCTTGAGGTACGAGACAGAATTAGTGAAAAGGGTGGGGTTAGTGTGGTGGGTGGAGCTAGTGTAAGACATGTAATGAAGGATGGGGTTAGAGTGGGGCAATAACAAGTTTCAATCAAGTCTCTTTTCTGTGGGAGGAAATGGCTTGCTAAGCAACCGTGTATCATAAAATGGCCACCATGACCCTTACCTGCataggctgtttttttttaaactgcatatCATCCACaataaaacttaataataaGATCTGCATAGTTGTTGTGTATTAGAAACTTTAATGTTTTAGCGAGCCATCTCCTCCCATTAGCAGGATGTTTTAGGCTAGCACTCAACCGGATCAAGTCCGCCAACGCCTCACTGCACCATTAACACTTGTCATTTCTAATTCCGCAGGATTTTAATCAAACTCATCCTCTGCAGTGTTAGTACATCCCCCGTCTGAGTTTTTAGTGTGTATCCCCATGTAACTGCTAACACAAAGCGCTCTATACAATCCGAAAGGTTTTATGTGCACGTCACACTTCATAGCCTCAGGTCGAGGCTGTCACTGGAATTAGGGcactcttatctctctctctttctcacacacacgtatacacacatgcataagcacacacaaacacacacacacacacactgctgcaggaTTATCTCTTAGGCGTGTAAGCAGGTCTGATATTAACTTCTCTCTGCCAGTGCAAATGCACTGGTTTGtgtggtacacacacacacacacacacacacagctattatGTTTCCATTCAGTGATTCTTCCAGTTCTGGTCCTCTTACGCCCTCTAGGAAGACGGGCAGAGCCAGGATGATGAGGAGAATGCGAAGATGGGTGGAGTCAGGGTGATGGTGAGAACAGCAACATGGGTGGTGGTAGTGGGATGGGGAGAATAGGAGGATCGATGGAGTCACGTGATTGGGTAACTAGGTAGCTGGGCAGAGTCTGAGGAATTGAGAAAGTAGGAAGATGGATGGTGTCGGTGGGATGGGGAGAACAGGAAGATGGGTGGAGTTAGTTAGGGTGATGGGGTAAATGGGTAGATAGGCAGAGTCAAAGGGAATAGGAAGATGGGAGGTGTCAGTTGGATGAGGAGAACAGGAAGATGGGTGGAGTCAGGGCAATGGGAAGAATAGAAGGTGGGCAGAGTCAGGATGATGGGGAGAATATGAAGATGGGTGGAGTCAGGTGATGGGTGAAATGAGGTACAAGAGGCTTGAAGGAAG
>TU438470
GGTACCATGTGCTAAAGGCCATGTAATAGCAAATGAAAAGAGCAGCTGAATAATGAGCAGCATAGAACTGAATTGTGAAGAGCGAGGAATCCATCATTGACGCTCCTCTGGCTGAGAGAGCACAAACCGCCCAATCGATACTCACCTGCCGAGCTGAAGGGCTTTCCGAGGATTAGATGTCAAACCTGCTGGGCCTATCTCTATGATAaactcttCAGCTATTCTCTGCTTAGACACAGACGATCTAGCTTAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438468 True 2023 lncRNA 0.46 3 2964268 2984930
TU438470 False 255 lncRNA 0.47 3 2949421 2984930

Neighbor

gene id symbol gene type direction distance location
LOC117596192 NA coding downstream 57336 2874908 ~ 2892085 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding downstream 110632 2833613 ~ 2838789 (-)
LOC113535483 LOC108258552,LOC108258561 coding downstream 121821 2823993 ~ 2827600 (-)
LOC113535756 LOC108258552 coding downstream 137812 2808317 ~ 2811609 (-)
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding downstream 145292 2797268 ~ 2804129 (-)
gpc5a gpc5 coding upstream 98140 3083070 ~ 3170485 (-)
LOC113535432 slitrk5,LOC108411062,LOC107558902,LOC107730401,LOC107677853,LOC107561275,LOC107698126 coding upstream 626789 3611719 ~ 3618120 (-)
LOC113535829 NA coding upstream 1472505 4457435 ~ 4457541 (-)
LOC117596196 NA coding upstream 1474387 4459317 ~ 4459423 (-)
LOC117596197 NA coding upstream 1476279 4461209 ~ 4461315 (-)
G370019 NA non-coding downstream 128107 2818603 ~ 2821314 (-)
G370028 NA non-coding downstream 158745 2783272 ~ 2790676 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding downstream 159367 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding downstream 174026 2774882 ~ 2775395 (-)
G369988 NA non-coding downstream 254844 2694149 ~ 2694577 (-)
LOC117596157 NA non-coding upstream 54244 3039174 ~ 3052202 (-)
G370207 NA non-coding upstream 85068 3069998 ~ 3072601 (-)
G370237 NA non-coding upstream 190214 3175144 ~ 3176945 (-)
G370272 NA non-coding upstream 240090 3225020 ~ 3225235 (-)
G370282 NA non-coding upstream 245019 3229949 ~ 3230185 (-)
LOC117596167 NA other downstream 96210 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 374950 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 1116692 1824204 ~ 1832729 (-)
G369586 NA other downstream 1154197 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1337755 1538453 ~ 1611666 (-)
G370658 NA other upstream 1858399 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2403974 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2545062 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 2957109 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 3030796 6015726 ~ 6033393 (-)

Expression


Co-expression Network