G370416


Basic Information

Item Value
gene id G370416
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 3983111 ~ 3983579 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU438779
ATACAGTTGAAGcgaatttataataaaatatcttGGTCGCAGATGTTACTGAACCTCAACCACACTTTATTGAATGGAACAGAAGCAGGTGGAACGCAGCAGCAAAGCAAACAGATGCAACCGTTGAGGACGCGAAGAAAAAATGCGACAAGGAAGAGATGAGGATGTGTTACAGAGACACATGAACCAGCTTATATCgttaatacagtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtaaaacatttccatttagtACATTACATCTCCATTTCATATCAAAATCTGAGGATTTTCCCAACTGCACATTAAAAATAGAGTACAGGATcaaaagaacaggaagtgataTCTGCTGCCTTGTTAAAGTCTTCCACTTGggaaatgttaaaatgcagcttTAGGATTGGATAACCTCACTGTTTCCTGGAATATCAGCCatttttagtaaaaataaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU438779 True 469 lncRNA 0.37 1 3983111 3983579

Neighbor

gene id symbol gene type direction distance location
LOC113535432 slitrk5,LOC108411062,LOC107558902,LOC107730401,LOC107677853,LOC107561275,LOC107698126 coding downstream 364991 3611719 ~ 3618120 (-)
gpc5a gpc5 coding downstream 812626 3083070 ~ 3170485 (-)
LOC117596192 NA coding downstream 1091026 2874908 ~ 2892085 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding downstream 1144322 2833613 ~ 2838789 (-)
LOC113535483 LOC108258552,LOC108258561 coding downstream 1155511 2823993 ~ 2827600 (-)
LOC113535829 NA coding upstream 473856 4457435 ~ 4457541 (-)
LOC117596196 NA coding upstream 475738 4459317 ~ 4459423 (-)
LOC117596197 NA coding upstream 477630 4461209 ~ 4461315 (-)
LOC117596198 NA coding upstream 479529 4463108 ~ 4463214 (-)
LOC113535753 LOC108258306,LOC108439384,LOC106595798 coding upstream 504570 4488149 ~ 4504739 (-)
G370415 NA non-coding downstream 171 3981710 ~ 3982940 (-)
G370372 NA non-coding downstream 205768 3777129 ~ 3777343 (-)
G370327 NA non-coding downstream 378526 3604354 ~ 3604585 (-)
G370308 NA non-coding downstream 517250 3465647 ~ 3465861 (-)
G370282 NA non-coding downstream 752926 3229949 ~ 3230185 (-)
G370418 NA non-coding upstream 2626 3986205 ~ 3986622 (-)
G370425 NA non-coding upstream 158343 4141922 ~ 4142128 (-)
G370468 NA non-coding upstream 462879 4446458 ~ 4447106 (-)
G370665 NA non-coding upstream 821301 4804880 ~ 4811748 (-)
G370663 NA non-coding upstream 912648 4896227 ~ 4914035 (-)
LOC117596167 NA other downstream 1129900 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 1408640 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 2150382 1824204 ~ 1832729 (-)
G369586 NA other downstream 2187887 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 2371445 1538453 ~ 1611666 (-)
G370658 NA other upstream 859750 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 1405325 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 1546413 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 1958460 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 2032147 6015726 ~ 6033393 (-)

Expression


Co-expression Network