G370468


Basic Information

Item Value
gene id G370468
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4446458 ~ 4447106 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU438835
gaagaaaccttgagaggaaccaggctcaacagagaacccatcctcatatgggtttacactgtagtgtgcgtgtgtgtgagcacaatgtgtgttggtgtagtccatggaaaacagctgaagcgttttcgtggcagtatgaagcattgccggtggacaggtccagagtgaaggggggggaggtctggatgaccggcagctcaggagtgatgctcatctggtccagagcgtaggggggtctggatcaccggcagctcaggagtgtagctcggcagaaggagaaggaaagtggttaggtacactcacagtcaccgtgtggagataaaactcaacatccacgagtcccccagatctactcctttgataaaaacactagtcgctaaatgctaggttaaataaataagtcttcaacctcgacttaaacactgagaccgtgtctgcttcacgtacattaactgggagactattccataattttggggcttggtaagagaaagctctgccccctgccatGGTTTTGGCAacgcgtggtactgatagacagcctgcatccttagagcgaagtaggcgtggcggaacgtaaggtactaacatatcgcttaaatactgcggagcgagaccgtttaatgctttataggttaggagtaatatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438835 True 649 lncRNA 0.49 1 4446458 4447106

Neighbor

gene id symbol gene type direction distance location
LOC113535432 slitrk5,LOC108411062,LOC107558902,LOC107730401,LOC107677853,LOC107561275,LOC107698126 coding downstream 828338 3611719 ~ 3618120 (-)
gpc5a gpc5 coding downstream 1275973 3083070 ~ 3170485 (-)
LOC117596192 NA coding downstream 1554373 2874908 ~ 2892085 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding downstream 1607669 2833613 ~ 2838789 (-)
LOC113535483 LOC108258552,LOC108258561 coding downstream 1618858 2823993 ~ 2827600 (-)
LOC113535829 NA coding upstream 10329 4457435 ~ 4457541 (-)
LOC117596196 NA coding upstream 12211 4459317 ~ 4459423 (-)
LOC117596197 NA coding upstream 14103 4461209 ~ 4461315 (-)
LOC117596198 NA coding upstream 16002 4463108 ~ 4463214 (-)
LOC113535753 LOC108258306,LOC108439384,LOC106595798 coding upstream 41043 4488149 ~ 4504739 (-)
G370425 NA non-coding downstream 304330 4141922 ~ 4142128 (-)
G370418 NA non-coding downstream 459836 3986205 ~ 3986622 (-)
G370416 NA non-coding downstream 462879 3983111 ~ 3983579 (-)
G370415 NA non-coding downstream 463518 3981710 ~ 3982940 (-)
G370372 NA non-coding downstream 669115 3777129 ~ 3777343 (-)
G370665 NA non-coding upstream 357774 4804880 ~ 4811748 (-)
G370663 NA non-coding upstream 449121 4896227 ~ 4914035 (-)
G370699 NA non-coding upstream 598934 5046040 ~ 5046246 (-)
G370702 NA non-coding upstream 611747 5058853 ~ 5059054 (-)
G370705 NA non-coding upstream 615038 5062144 ~ 5062436 (-)
LOC117596167 NA other downstream 1593247 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 1871987 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 2613729 1824204 ~ 1832729 (-)
G369586 NA other downstream 2651234 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 2834792 1538453 ~ 1611666 (-)
G370658 NA other upstream 396223 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 941798 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 1082886 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 1494933 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 1568620 6015726 ~ 6033393 (-)

Expression


Co-expression Network