G370663


Basic Information

Item Value
gene id G370663
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4896227 ~ 4914035 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU439059
tcagccatatttaaccatttaaataaagttttactTAAAATTCCATGTTCCCATGTCCATGTGATATGCaaattgttataattataaaaaataaccatattttttaaaagtaaattaaaatgaaaaaaaaaaagcaaattaaattgTTCAGCGTGGGAGAGGCAGACAGATCCAGAACCACATATAGATTACTCAAACTCACAGGTGATGGACTTTTAATATGCATTTGTTATTCCCTGCAAACAATGAAAATGACAAAGCCATATAATAAAAAATCCATTATGGTAAAACACTTAAATTGCTGTCAATACTCTGTCAAAACAAAGGAGCATGCTTAAACCAGTGTTAAAGGTTatcacccttttttttttttttaaattgcatagaagattaaaaacatttttaataataaaacaattctaGACTTGTATGAAACTACTCAAATCAGCAATCTGGAACCATGACCACccaaaaaaatagattttatttatctcCCCTTGTAAACATATTCTGTCCAGTTGTTACACTACAAAAGCATGCAATTCATATGTTTATGTTATGACAATTTTATATGTCATAATATATTAGTCTAAACCCTGTTCCTCTGTTATCACATTGACCAATGATTCCATGGCATATCCAATGTTATCCACCATATGGATGAGCCTTCCCATGTTCTACCCATAGTCTCTGTGGTTTGGCTTGTGGCCACATGCAGTGAGGCCAGGCTGGTGTCAGATCTCTGGGAGGCAGTAGAGGGAGATGACAGGGCAGTGCCATTCACCTTGGACTCAGCCTGTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439059 True 803 lncRNA 0.34 2 4896227 4914035

Neighbor

gene id symbol gene type direction distance location
knstrn knstrn coding downstream 268986 4619201 ~ 4627241 (-)
cfap221 cfap221 coding downstream 277419 4596430 ~ 4618808 (-)
LOC117596183 NA coding downstream 371443 4524502 ~ 4524784 (-)
cnpy3 cnpy3,tnrc5,LOC102798477 coding downstream 378239 4511270 ~ 4517988 (-)
LOC113535753 LOC108258306,LOC108439384,LOC106595798 coding downstream 391488 4488149 ~ 4504739 (-)
brat1 brat1 coding upstream 155325 5069360 ~ 5112747 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding upstream 339658 5253693 ~ 5268198 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding upstream 355475 5269510 ~ 5277092 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding upstream 374650 5288685 ~ 5316195 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding upstream 417885 5331920 ~ 5340521 (-)
G370665 NA non-coding downstream 84479 4804880 ~ 4811748 (-)
G370468 NA non-coding downstream 449121 4446458 ~ 4447106 (-)
G370425 NA non-coding downstream 754099 4141922 ~ 4142128 (-)
G370418 NA non-coding downstream 909605 3986205 ~ 3986622 (-)
G370416 NA non-coding downstream 912648 3983111 ~ 3983579 (-)
G370699 NA non-coding upstream 132005 5046040 ~ 5046246 (-)
G370702 NA non-coding upstream 144818 5058853 ~ 5059054 (-)
G370705 NA non-coding upstream 148109 5062144 ~ 5062436 (-)
G370706 NA non-coding upstream 148519 5062554 ~ 5062764 (-)
LOC117596137 NA non-coding upstream 198718 5112753 ~ 5115118 (-)
G370658 NA other downstream 6846 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2043016 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2321756 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3063498 1824204 ~ 1832729 (-)
G369586 NA other downstream 3101003 1776319 ~ 1795224 (-)
LOC113537294 NA other upstream 474869 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 615957 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 1028004 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 1101691 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 1444604 6358639 ~ 6363203 (-)

Expression


Co-expression Network