G370665


Basic Information

Item Value
gene id G370665
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4804880 ~ 4811748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU439062
TGAATATAACATGCAGTTATTCTCATATAATAGCATGGTCTGGACTATGTTATTCCGATTAGAAGCagaagcagcctttatttgtcacatatacattacagcacattgAAATTCTTtccttcgcatatcccagcttgttaggaaatTGGGGTctgagcgcagggtcagccatgatacagaaCCCCCgaagcagagagggttaaggccttcctcaagggcccaacaatggcagcttggcagttctggggcttgaacccccgactgtctgatcagtaacccagagccttaaccactgagccaccactgccatACCGAtgaatacaatatttaatttattaaagagcgACATCAtgtattttaatggtttaaagttagatttaatgctgtggaacatctgaggaataagttagttcctgttctcaattacctatagctgcaataaacagtcattcccttaccagtctctctcgctctctctcaaaAATTGCAGcctgtctcctaacaaaaacatcacatcaacgattatacattttactttgttaaacaagactttttatccgtttattagTCGTACATTATGTGGTGCGTCCATCGTACATGTCCCTGTGCATGAGCTGTttctgtagaaacaataacgtattacgACGAGTGCTTCAATATTGACTtgtcgttcatgttacagccagaacaactgtccaagccatgctgttatacgaaaTTAATGCACATCTCCTGACCAATGAGATTTGAGCAGTGGACCATATGCTGTTAAATGCACAGTTATAAGCTGTTTTTAACATATCTGCTGAAAATTGCCAATCTAGTATTTTCAAATgcatataacaataaaaactcaattaaagggaaaaaaatccaccctaaacgacttgcatattaatcttgtGCTCTTTGCTGCTACATACGATTTATTCTGTAAAGAAATtgagttgacttttttgtttaaacctcttttacagacattttggtctattttcacttagTTAATTGGTCCTACTTTGCCCACACTGGCATTCAACTAaatgctgatagtggtgccagagTGAATTAGCCTTTGTTTCATCTCTATTTTAGAGACGGATGCACCGTCAACACCACCGTGTTCATTATCTTGTAGATCGTTAACCAGCTGATCCGAAACCCTGCCCCAACTCAGTGTAACTGCATcatatagctgcactgcattctggaactttgagtttCAAccatttgctgtctccactatgTTGGTTCCTCACCAATATGCCGGCGGAAAATGGTGACTGAGAAAAGAAGTTCTTGCTCTTCAGTTTTTAGGAAATCTGAgcgttatcccttatgtttgtgattgccaaaaaaaatgttttctaatatTAAACGCCATTGTAACTACACTAGCAACGCCCCCCTGTGGCATCAATGCAGGAGACAACCACTagcttctcacaggaataacgaaAACATAGCACCAACCAAGAAATTAGCACtacaatcactaatcactaagcacataacaaatatttaaatataaacatatttaatgtgtttcagggtggagttgtCCTTTAAAGCAAGTTTAATATTAAAGGAAATGTCCATGGTCACCTAGTCACTGGCACTGTGTAGGACAGCTGAGACTTGTATATTTGGCCTTGTACCAAACAAATATCAACCAACCGACCCTAACATACCTTTCGAAAAGGCGGAAGGTGCTGTCAGTGTATGTGGCCTTAGACAAAGATATTGTAACTGTACGTCACTGATGGCGATGATAATTTCCACCTACGACAATTCTCTGCCGTCTACAATATCTATACAACTTGAGGTCTGAATACAGCACACCCATATTAATTCAGCTACTGGATACCTGATTATTACAAAACTTTGCAAACAGCCACAACAAATGCCGCTGTTGTGAGCTACGTTTGCTTTAAAGTGCCGTTAGAATATGGAGCCAGACAAAGGCCCTCTTCAACAAAATCATGGCTTTAAATATgagacataaaatacatttgaatataTCACACCACTAACCAAAGAGCCAAGTGATTCTTGTGTCTAAATCATTTGAAATCTGCAAGAGGCATTGCGTCAATTTGATTAAGGACGGCCGTAGAAGAACGAccgagagaaaacagaaaagaccGAAGCACATGAATGTTATGAAGGCATGAAAATATGTATCTGCATTTGCTGtagaagagaggagaggcacCTGCTGGACTGTAAAAATCGACGGAAATTCTCGGACTACAACTGTACCCGCTAGCGTAGCTAACATGATTTTAAAACTCCTTCAGCGTCCTTCGCAGGATATTAATCGAAATTTCACGACGGCACTGATGGTTCGCACTTACTTCCTCAACTGTTCCCTCATCCTTTTCGATGTACAGTTTATCCAAACGATATCTTGGAAACTGAGAACTCGATGTTCTTGTGAGTGGCGGCCTCGATATTCCCTCTCCTTGGAGGAAAACGCATTAGATTTTCCTGCAAATCTTCTCACGAGGTTCCGATGCTCAGAAAAGGCGGAGCTATTCCATTCACTCCCTTCCCCCAAACGCCTTCACTGAGGAATCCTGCGAAAGACCTCGCGAAGAAGAACAGTATTTTACTGCCTTGTCGAGTGGAGCTAGCAGTCTAGCAAAAACAATATGGACATTACAGCTTAAAAATTAGAGGCCAAGCATTAATGTATGGATTAAATTAGCGCTGTGTTAGCGTTCAAGGGGTTCAATTTACCGCACTGAAAACAAACTAATTTGCACTAATTCGTCGAGTTGTATGACATGCTTGCCAATCCTGAAATTAGTCTCACAAAAAAGAACGAGATACTCAAAATCAAAATTAATGGAAATGCGGTTATTTATATGGTATAATACAAAACGACCAGAGCACAATTGTTTAGTCTCTGATCAGGATTCCTTCTGTCATGCAAATGTATTTTGCTATCATATAAAAATACGTGTGCAGAGTCTAAATTTATATTGCTCATGCTCATGAATTTGCTTTTACGTGCACACTCAAAATTACACTGTCACATTTGCTTGCTTGAAAAATCGACATCCATCTTGGAGGCATCTTGCTCACAAACCAAGTCACGctccagtttcttttttttcctttcagaattTCAGCTCATGTTTTGATCAATTTAATACCAAGCTATAATTTGACAGCCTAATTAACATCCAAGATGGCTTCTATAAACTACAGCACAAGGAAATGTTGttttttcttaggtaaaggagcagatctggaggctTCACAGGCACAgagtgaactgggatgtttggatgctgtcgccccccactTTCACGCATTAACTCAGGTTTGTtcatggtggagtggctggccattttatgtcccagggtgccctcatgtcttcTGGCTTCTGGCTTTCCCTTTcattatgctgtcacagctagtcttgccggagtccctgcctGCACTCTTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439062 True 3457 lncRNA 0.40 2 4804880 4811748

Neighbor

gene id symbol gene type direction distance location
knstrn knstrn coding downstream 177639 4619201 ~ 4627241 (-)
cfap221 cfap221 coding downstream 186072 4596430 ~ 4618808 (-)
LOC117596183 NA coding downstream 280096 4524502 ~ 4524784 (-)
cnpy3 cnpy3,tnrc5,LOC102798477 coding downstream 286892 4511270 ~ 4517988 (-)
LOC113535753 LOC108258306,LOC108439384,LOC106595798 coding downstream 300141 4488149 ~ 4504739 (-)
brat1 brat1 coding upstream 257612 5069360 ~ 5112747 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding upstream 441945 5253693 ~ 5268198 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding upstream 457762 5269510 ~ 5277092 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding upstream 476937 5288685 ~ 5316195 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding upstream 520172 5331920 ~ 5340521 (-)
G370468 NA non-coding downstream 357774 4446458 ~ 4447106 (-)
G370425 NA non-coding downstream 662752 4141922 ~ 4142128 (-)
G370418 NA non-coding downstream 818258 3986205 ~ 3986622 (-)
G370416 NA non-coding downstream 821301 3983111 ~ 3983579 (-)
G370415 NA non-coding downstream 821940 3981710 ~ 3982940 (-)
G370663 NA non-coding upstream 84479 4896227 ~ 4914035 (-)
G370699 NA non-coding upstream 234292 5046040 ~ 5046246 (-)
G370702 NA non-coding upstream 247105 5058853 ~ 5059054 (-)
G370705 NA non-coding upstream 250396 5062144 ~ 5062436 (-)
G370706 NA non-coding upstream 250806 5062554 ~ 5062764 (-)
LOC117596167 NA other downstream 1951669 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2230409 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 2972151 1824204 ~ 1832729 (-)
G369586 NA other downstream 3009656 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 3193214 1538453 ~ 1611666 (-)
G370658 NA other upstream 31581 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 577156 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 718244 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 1130291 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 1203978 6015726 ~ 6033393 (-)

Expression


Co-expression Network