G370705


Basic Information

Item Value
gene id G370705
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5062144 ~ 5062436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU439117
CTCAAGAATGGCTAGGGGAAAAAACATTGGACTATTCTTAAATGGCCCTCTATGAGCCCTGATCTTAATCCTattgaacatctgtggaaaGATCTGAAATATGCAATGTGCAGAAGCCACCCTTCAAACCGCAAACAGTTagagcagtttgctcaggaagagtgggccaaaataccTGTTACCCAATGCAGAAGTCTCCTCTGCAGTACTTGGTACTGCAGACACGATGGGTTCTGAATATGGACCAGCTTTTCAGAAGTTCAGGTTCGCCTACGGAGAATAAGGAGCTCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439117 True 293 lncRNA 0.45 1 5062144 5062436

Neighbor

gene id symbol gene type direction distance location
knstrn knstrn coding downstream 434903 4619201 ~ 4627241 (-)
cfap221 cfap221 coding downstream 443336 4596430 ~ 4618808 (-)
LOC117596183 NA coding downstream 537360 4524502 ~ 4524784 (-)
cnpy3 cnpy3,tnrc5,LOC102798477 coding downstream 544156 4511270 ~ 4517988 (-)
LOC113535753 LOC108258306,LOC108439384,LOC106595798 coding downstream 557405 4488149 ~ 4504739 (-)
brat1 brat1 coding upstream 6924 5069360 ~ 5112747 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding upstream 191257 5253693 ~ 5268198 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding upstream 207074 5269510 ~ 5277092 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding upstream 226249 5288685 ~ 5316195 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding upstream 269484 5331920 ~ 5340521 (-)
G370702 NA non-coding downstream 3090 5058853 ~ 5059054 (-)
G370699 NA non-coding downstream 15898 5046040 ~ 5046246 (-)
G370663 NA non-coding downstream 148109 4896227 ~ 4914035 (-)
G370665 NA non-coding downstream 250396 4804880 ~ 4811748 (-)
G370468 NA non-coding downstream 615038 4446458 ~ 4447106 (-)
G370706 NA non-coding upstream 118 5062554 ~ 5062764 (-)
LOC117596137 NA non-coding upstream 50317 5112753 ~ 5115118 (-)
G370711 NA non-coding upstream 72402 5134838 ~ 5135130 (-)
G370713 NA non-coding upstream 73771 5136207 ~ 5136693 (-)
G370784 NA non-coding upstream 127639 5190075 ~ 5190300 (-)
G370658 NA other downstream 172763 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2208933 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2487673 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3229415 1824204 ~ 1832729 (-)
G369586 NA other downstream 3266920 1776319 ~ 1795224 (-)
LOC113537294 NA other upstream 326468 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 467556 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 879603 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 953290 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 1296203 6358639 ~ 6363203 (-)

Expression


Co-expression Network