G370836


Basic Information

Item Value
gene id G370836
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5236722 ~ 5238012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU439275
TTTATTGCAGAAGCTCAGTACAGCCAATGTGCATCCAAAAACTTCcattttcatgttgttttttgtaaatgaagATGTCATGGTCATGAGGCAATGAGCTAGACAACTGAAGTGAGTCAGATGTACTAAGCAGATATGCAGAAGTGTTCAGCAAAGggaatgataaaaaaaatagtgcaacAGGTACTGTAGAGGCTCTATTTAACAAACTTCTGAAGCAATAAAGAAACTTTGAAATGTTCAGTCACCACCCCAACAGCTTTTGTTATGTATGATAGGGTTGAACAGACAAGTTGTCTCTGACCTTTTATATCAAAGGAAttataaagtgaaaaatagGCTTttcctgtatttgtttttaaggACTATAAggataaatatattaattacattaatgtaTCTCACTACATTGAATAATGAAaaaggatttttcttttaaagttaGAAAGAGCAACAGGTGTTAAAATGGTGAAATTCCTGAAATGTCTGCATGTACTGCAAAAATACTTCTCACTTGGTTGGGTATGCTATTAACTAGACAATTTGTCAGAGTAAACTAGCATTACATATCTAACCCTAGAGTCCTACAGTTAAGCAAATGTGCTAACAAGATTATATTAGCAAGCAGGTTGCCTCCATGCTAACATCATAAATGATAAAGCATGTATTGGTTGAACTGATGAACTTCAATGTGCAGAAAAGTTTGGATTTATAAGCGAGAGCTGTATAAAGTGCGTGCATGTTCGGTCTGCAGTCTGGTTCCTGTCCATATTATGCTGCACACCACAAACTGTCTACAACTGTAGTGAAAAATATTCACTGTTTATCAGCTGACTTATTTGTAGTCATTTGTAGTTCTGTACATcagtacagtatataacttTGTGTTTACACTTATTATTAGGAAAAGATCAAACAACTTGTCTGCCAAAATAGGgacataaaattaataataaaaaaacatccatcTTTTTGCATCCAAATAATCCATTTTAACTTCTCGCACTCAGATCCACCCAGACGTTTTTGGTAGCTAACTGATCATGTGATCTCACGTTGCCACATAATAGTATTTTCGTTCTAGTTGGTTTGAGCAGATTATAGCAGATTTTTATAGCAGAATGTagttaatgtatgtgtgtggctCTACTTAAGCACCACCATTTCTTTACTAACCAAAGAGACCAGTACtgccttcttgttttctattggctcacaaaaGCAAGGTTTaggaattcacaggtcaaactGCTCCTGTTTAAAGCTGGCTCAAAGCAAAAGTAACTGCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439275 True 1291 lncRNA 0.35 1 5236722 5238012

Neighbor

gene id symbol gene type direction distance location
brat1 brat1 coding downstream 123975 5069360 ~ 5112747 (-)
knstrn knstrn coding downstream 609481 4619201 ~ 4627241 (-)
cfap221 cfap221 coding downstream 617914 4596430 ~ 4618808 (-)
LOC117596183 NA coding downstream 711938 4524502 ~ 4524784 (-)
cnpy3 cnpy3,tnrc5,LOC102798477 coding downstream 718734 4511270 ~ 4517988 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding upstream 15681 5253693 ~ 5268198 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding upstream 31498 5269510 ~ 5277092 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding upstream 50673 5288685 ~ 5316195 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding upstream 93908 5331920 ~ 5340521 (-)
urp2 LOC108258299 coding upstream 171599 5409611 ~ 5412773 (-)
LOC113537335 NA non-coding downstream 45075 5190347 ~ 5191647 (-)
G370784 NA non-coding downstream 46422 5190075 ~ 5190300 (-)
G370713 NA non-coding downstream 100029 5136207 ~ 5136693 (-)
G370711 NA non-coding downstream 101592 5134838 ~ 5135130 (-)
LOC117596137 NA non-coding downstream 121604 5112753 ~ 5115118 (-)
G370837 NA non-coding upstream 2053 5240065 ~ 5240276 (-)
G370845 NA non-coding upstream 11820 5249832 ~ 5250096 (-)
G370853 NA non-coding upstream 104743 5342755 ~ 5343080 (-)
LOC113537484 NA non-coding upstream 107583 5345595 ~ 5365148 (-)
LOC113537576 NA non-coding upstream 177614 5415626 ~ 5429432 (-)
G370658 NA other downstream 347341 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2383511 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2662251 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3403993 1824204 ~ 1832729 (-)
G369586 NA other downstream 3441498 1776319 ~ 1795224 (-)
LOC113537294 NA other upstream 150892 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 291980 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 704027 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 777714 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 1120627 6358639 ~ 6363203 (-)

Expression


Co-expression Network