G370853


Basic Information

Item Value
gene id G370853
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5342755 ~ 5343080 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU439294
GTGTTTCAGTAATGTTACACAAGAttggttgtgtttttgtatatgGAACATCAgggtaaaaaataatttatgcttGTTGAAGACAAGAACACCAAGAGCAGGAAGGATATGAGTAGATAATTCtgccaaagaaaaaaagtagaaaCTTGTGTTGGGAAGGGTGCTGTTAGAGTCTGGTAACCTGAGCACACAATTCTCTCTCCTAGGCACAATGGTCTCTTACAAGCAGCATGCCTGCCTCACACAAAAGCACCAGTGTGGGTGACTGACTATGGCCATTCAGAGACTTAGTCCTGACATTCCACTGGGTTATTCTGTGGTACAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439294 True 326 lncRNA 0.42 1 5342755 5343080

Neighbor

gene id symbol gene type direction distance location
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding downstream 2234 5331920 ~ 5340521 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding downstream 26560 5288685 ~ 5316195 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding downstream 65663 5269510 ~ 5277092 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding downstream 74557 5253693 ~ 5268198 (-)
brat1 brat1 coding downstream 230008 5069360 ~ 5112747 (-)
urp2 LOC108258299 coding upstream 66531 5409611 ~ 5412773 (-)
wu:fa56d06 LOC108258903 coding upstream 206473 5549553 ~ 5557090 (-)
n6amt1 n6amt1,LOC107563652 coding upstream 246692 5589772 ~ 5596095 (-)
jam2a jam2 coding upstream 553256 5896336 ~ 5908867 (-)
mrpl39 mrpl39 coding upstream 570879 5913959 ~ 5920199 (-)
G370845 NA non-coding downstream 92659 5249832 ~ 5250096 (-)
G370837 NA non-coding downstream 102479 5240065 ~ 5240276 (-)
G370836 NA non-coding downstream 104743 5236722 ~ 5238012 (-)
LOC113537335 NA non-coding downstream 151108 5190347 ~ 5191647 (-)
G370784 NA non-coding downstream 152455 5190075 ~ 5190300 (-)
LOC113537484 NA non-coding upstream 2515 5345595 ~ 5365148 (-)
LOC113537576 NA non-coding upstream 72546 5415626 ~ 5429432 (-)
G370941 NA non-coding upstream 163032 5506112 ~ 5506317 (-)
G370942 NA non-coding upstream 165022 5508102 ~ 5508369 (-)
LOC117596170 NA non-coding upstream 167636 5510716 ~ 5518380 (-)
G370658 NA other downstream 453374 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2489544 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2768284 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3510026 1824204 ~ 1832729 (-)
G369586 NA other downstream 3547531 1776319 ~ 1795224 (-)
LOC113537294 NA other upstream 45824 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 186912 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 598959 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 672646 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 1015559 6358639 ~ 6363203 (-)

Expression


Co-expression Network