LOC113537294


Basic Information

Item Value
gene id LOC113537294
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5388904 ~ 5395012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU439333
ACAACCAATGGTGCGGGGAGAACACAGCTTCGAGTTAGCTAAAAATGGAGTATGATTGCTCCAGCTCGACTTATTAGAGATTTTCTGAAGACCTGAATGCAAAGAACGAAAATGATAAACTGGCGGGCTTTAGACAACGTTCCCTTGCTGTTCTACATTCTGGCAGCCAAGACTCTTCTCTTGTGTCTTGCTTTTGCTGGAGCTAAACTGTATCAGCAGAAGAAGGCCCAGGCAGCACTGAAACAGCAGTTGGAGATGAAGAGAAAACTTGCACAGGAAACACAAGAACTTATTGACAACAAGAAGGATGACTGAACATCTTGGTGTGCTAGAGAAAGCAGGATAAACAAAAGATGTACTGCCACACCCTCACACAGAAGTATTGGTGCCATTGACAAATCTGCTGACTCGGCTACAGGTGGAGCTGTTTCCTTTGTTTACCTGGAGCTAATCAATGTTGCCTGCTACCTTTTTATTCTACACTCTTATTTATTACTCTGTGAAGCCTgtttataagtaataaaataaataaatggataactTAGGACCATTTTACATACTTTGTTTGCTTAAAAGtctgaaatgaaatgcagtCTTAGATGTTTAATgttcatgtaaataaatgaatagtaaTGGTTTCCAACATTTTGAGGAAGGGATACATCCACTGGAGTTAAAGTAATACAAAGCAATAAATACTGCTCACTCTGCT
>TU439334
ACAACCAATGGTGCGGGGAGAACACAGCTTCGAGTTAGCTAAAAATGGAGTATGATTGCTCCAGCTCGACTTATTAGAGATTTTCTGAAGACCTGAATGCAAAGAACGAAAATGATAAACTGGCGGGCTTTAGACAACGTTCCCTTGCTGTTCTACATTCTGGCAGCCAAGACTCTTCTCTTGTGTCTTGCTTTTGCTGGAGCTAAACTGTATCAGCAGAAGAAGGCCCAGGCAGCACTGAAACAGCAGTTGGAGATGAAGAGAAAACTTGCACAGGAAACACAAGAACTTATTGACAACAAGAAGGATGACTGAACATCTTGGTGTGCTAGAGAAAGCAGGATAAACAAAAGATGTACTGCCACACCCTCACACAGAAGTATTGGTGCCATTGACAAATCTGCTGACTCGGCTACAGGTGGAGCTGTTTCCTTTGTTTACCTGGAGCTAATCAATGTTGCCTGCTACCTTTTTATTCTACACTCTTATTTATTACTCTGTGAAGCCTgtttataagtaataaaataaataaatggataactTAGGACCATTTTACATACTTTGTTTGCTTAAAAGtctgaaatgaaatgcagtCTTAGATGTTTAATgttcatgtaaataaatgaatagtaaTGGTTTCCAACATTTTGAGGAAGGGATACATCCACTGGAGTTAAAGTAATACAAAGCAATAAATACTGCTCACTCTGCTCAAATAAAGTTTTCCATTTACATACTTGATGTCATCATCTCAAATGTTCTGTATTAGagtttatgtatttacataataatgTGACGTTTCTGCTAAGGTTTCATACCATACAACAGCCTCGTCGAAAATGTTCATCATAGGGGCAATagccataaaatatttttaaaatgttatgcaaATATGAATTTTATAGCAGACAGTGGAATTTTACCAATGTGAGGGATTGCTCATGTACTGATAACTTGTGTCTGTTGGGGATAGCAACTTCTAGATACAGGTAGATATATGTCCTGACTTTGGCCAGCATTTCCCCCCAAGTGATGCACACTAAATTAAATTCTGGACATCTGACACAAGTTGAGTCTGTTGTAGAGATTCTTTACTGCCACTTCCAGTTCATAGTGTTTTAGCATTTTCACAGAGTGGCATAATTAAGAGAGTTTCTTCCTCCTAGCTTATACACTACATCATAGCCCAGCACACTGGTTTACAACATGGGACTAGACAtggaaaatatatttgaaatataataCTATCAATACTAATTAACATGTTGGACTTGTTTTGCAGTCTGGATGTTCAATAAGTCGCTACAGATGTCAGACTTACAACAGTGTATAACAATATTATACACTAGAATTAAGACTCTTTGCTATAGAGAACCATAGTGATGCAAAATTTCAGATCAAATTAATTAGCTACTTGTATTTAGTTAATGATTCATATGTTCATccattaaaaactgaaaacatttgtcCTCCAAAGTATGGGaatactttacactacactccAGTGTTGACTTCATGACATAACTCGAGAAACAATGGAAGCAGGTTGTTGTGTTATCCTACCTTATCAGGCTGTCTGACTGCATCACAAATTCAAGGTCATGTTTATCAGTGTTTCTTACCCTTCCCT
>TU439335
GTTTTCGTTACACCCCGGAGAGGAGCCAAAATGGCCGCCGTGTGGAGAAATTTCACTAGAAGGACTTTGGGTTGACTATTTGAGCAGGCTACATGAATTATTTCAAGATGTTCATATaaggaatagggagtagggcacCATTTCGGCCACAGCCCAAGAATGGCGTGAATTAGTGTGAAGTAAGGAGGGATGTGTCCTGATTGGATCACACGCTCAGGGGCGGGACATGAGCTGTGTGCGGGAACAACCAATGGTGCGGGGAGAACACAGCTTCGAGTTAGCTAAAAATGGAGTATGATTGCTCCAGCTCGACTTATTAGAGATTTTCTGAAGACCTGAATGCAAAGAACGAAAATGATAAACTGGCGGGCTTTAGACAACGTTCCCTTGCTGTTCTACATTCTGGCAGCCAAGACTCTTCTCTTGTGTCTTGCTTTTGCTGGAGCTAAACTGTATCAGCAGAAGAAGGCCCAGGCAGCACTGAAACAGCAGTTGGAGATGAAGAGAAAACTTGCACAGGAAACACAAGAACTTATTGACAACAAGAAGGATGACTGAACATCTTGGTGTGCTAGAGAAAGCAGGATAAACAAAAGATGTACTGCCACACCCTCACACAGAAGTATTGGTGCCATTGACAAATCTGCTGACTCGGCTACAGGTGGAGCTGTTTCCTTTGTTTACCTGGAGCTAATCAATGTTGCCTGCTACCTTTTTATTCTACACTCTTATTTATTACTCTGTGAAGCCTgtttataagtaataaaataaataaatggataactTAGGACCATTTTACATACTTTGTTTGCTTAAAAGtctgaaatgaaatgcagtCTTAGATGTTTAATgttcatgtaaataaatgaatagtaaTGGTTTCCAACATTTTGAGGAAGGGATACATCCACTGGAGTTAAAGTAATACAAAGCAATAAATACTGCTCACTCTGCT
>TU439337
ACAACCAATGGTGCGGGGAGAACACAGCTTCGAGTTAGCTAAAAATGGAGTATGATTGCTCCAGCTCGACTTATTAGAGATTTTCTGAAGACCTGAATGCAAAGAACGAAAATGATAAACTGGCGGGCTTTAGACAACGTTCCCTTGCTGTTCTACATTCTGGCAGCCAAGACTCTTCTCTTGTGTCTTGCTTTTGCTGGAGCTAAACTGTATCAGCAGAAGAAGGCCCAGGCAGCACTGAAACAGCAGTTGGAGATGAAGAGAAAACTTGCACAGGAAACACAAGAACTTATTGACAACAAGAAGGATGACTGAACATCTTGGTGTGCTAGAGAAAGCAGGATAAACAAAAGATGTACTGCCACACCCTCACACAGAAGTATTGGTGCCATTGACAAATCTGCTGACTCGGCTACAGGTGGAGCTGTTTCCTTTGTTTACCTGGAGCTAATCAATGTTGCCTGCTACCTTTTTATTCTACACTCTTATTTATTACTCTGTGAAGCCTgtttataagtaataaaataaataaatggataactTAGGACCATTTTACATACTTTGTTTGCTTAAAAGtctgaaatgaaatgcagtCTTAGATGTTTAATgttcatgtaaataaatgaatagtaaTGGTTTCCAACATTTTGAGGAAGGGATACATCCACTGGAGTTAAAGTAATACAAAGCAATAAATACTGCTCACTCTGCTCAAATAAAGTTTTCCATTTACATACTTGATGTCATCATCTCAAATGTTCTGTATTAGagtttatgtatttacataataatgTGACGTTTCTGCTAAGGTTTCATACCATACAACAGCCTCGTCGAAAATGTTCATCATAGGGGCAATagccataaaatatttttaaaatgttatgcaaATATGAATTTTATAGCAGACAGTGGAATTTTACCAATGTGAGGGATTGCTCATGTACTGATAACTTGTGTCTGTTGGGGATAGCAACTTCTAGATACAGGTAGATATATGTCCTGACTTTGGCCAGCATTTCCCCCCAAGTGATGCACACTAAATTAAATTCTGGACATCTGACACAAGTTGAGTCTGTTGTAGAGATTCTTTACTGCCACTTCCAGTTCATAGTGTTTTAGCATTTTCACAGAGTGGCATAATTAAGAGAGTTTCTTCCTCCTAGCTTATACACTACATCATAGCCCAGCACACTGGTTTACA
>TU439338
ACAACCAATGGTGCGGGGAGAACACAGCTTCGAGTTAGCTAAAAATGGAGTATGATTGCTCCAGCTCGACTTATTAGAGATTTTCTGAAGACCTGAATGCAAAGAACGAAAATGATAAACTGGCGGGCTTTAGACAACGTTCCCTTGCTGTTCTACATTCTGGCAGCCAAGACTCTTCTCTTGTGTCTTGCTTTTGCTGGAGCTAAACTGTATCAGCAGAAGAAGGCCCAGGCAGCACTGAAACAGCAGTTGGAGATGAAGAGAAAACTTGCACAGGAAACACAAGAACTTATTGACAACAAGAAGGATGACTGAACATCTTGGTGTGCTAGAGAAAGCAGGATAAACAAAAGATGTACTGCCACACCCTCACACAGAAGTATTGGTGCCATTGACAAATCTGCTGACTCGGCTACAGGTGGAGCTGTTTCCTTTGTTTACCTGGAGCTAATCAATGTTGCCTGCTACCTTTTTATTCTACACTCTTATTTATTACTCTGTGAAGCCTgtttataagtaataaaataaataaatggataactTAGGACCATTTTACATACTTTGTTTGCTTAAAAGtctgaaatgaaatgcagtCTTAGATGTTTAATgttcatgtaaataaatgaatagtaaTGGTTTCCAACATTTTGAGGAAGGGATACATCCACTGGAGTTAAAGTAATACAAAGCAATAAATACTGCTCACTCTGCTCAAATAAAGTTTTCCATTTACATACTTGATGTCATCATCTCAAATGTTCTGTATTAGagtttatgtatttacataataatgTGACGTTTCTGCTAAGGTTTCATACCATACAACAGCCTCGTCGAAAATGTTCATCATAGGGGCAATagccataaaatatttttaaaatgttatgcaaATATGAATTTTATAGCAGACA
>XM_026931711.2
TTGGATCACACGCTCAGGGGCGGGACATGAGCTGTGTGCGGGAACAACCAATGGTGCGGGGAGAACACAGCTTCGAGTTAGCTAAAAATGGAGTATGATTGCTCCAGCTCGACTTATTAGAGATTTTCTGAAGACCTGAATGCAAAGAACGAAAATGATAAACTGGCGGGCTTTAGACAACGTTCCCTTGCTGTTCTACATTCTGGCAGCCAAGACTCTTCTCTTGTGTCTTGCTTTTGCTGGAGCTAAACTGTATCAGCAGAAGAAGGCCCAGGCAGCACTGAAACAGCAGTTGGAGATGAAGAGAAAACTTGCACAGGAAACACAAGAACTTATTGACAACAAGAAGGATGACTGAACATCTTGGTGTGCTAGAGAAAGCAGGATAAACAAAAGATGTACTGCCACACCCTCACACAGAAGTATTGGTGCCATTGACAAATCTGCTGACTCGGCTACAGGTGGAGCTGTTTCCTTTGTTTACCTGGAGCTAATCAATGTTGCCTGCTACCTTTTTATTCTACACTCTTATTTATTACTCTGTGAAGCCTgtttataagtaataaaataaataaatggataactTAGGACCATTTTACATACTTTGTTTGCTTAAAAGtctgaaatgaaatgcagtCTTAGATGTTTAATgttcatgtaaataaatgaatagtaaTGGTTTCCAACATTTTGAGGAAGGGATACATCCACTGGAGTTAAAGTAATACAAAGCAATAAATACTGCTCACTCTGCTCAAATAAAGTTTTCCATTTACATA

Function

GO: NA

KEGG:

id description
ko00230 Purine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU439333 False 712 lncRNA 0.39 3 5389822 5394769
TU439334 True 1630 lncRNA 0.37 3 5388904 5394769
TU439335 False 955 lncRNA 0.42 3 5389822 5395012
TU439337 False 1204 lncRNA 0.38 3 5389330 5394769
TU439338 False 911 lncRNA 0.37 3 5389623 5394769
XM_026931711.2 False 779 mRNA 0.40 3 5389798 5394812

Neighbor

gene id symbol gene type direction distance location
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding downstream 48383 5331920 ~ 5340521 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding downstream 72709 5288685 ~ 5316195 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding downstream 111812 5269510 ~ 5277092 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding downstream 120706 5253693 ~ 5268198 (-)
brat1 brat1 coding downstream 276157 5069360 ~ 5112747 (-)
urp2 LOC108258299 coding upstream 14599 5409611 ~ 5412773 (-)
wu:fa56d06 LOC108258903 coding upstream 154541 5549553 ~ 5557090 (-)
n6amt1 n6amt1,LOC107563652 coding upstream 194760 5589772 ~ 5596095 (-)
jam2a jam2 coding upstream 501324 5896336 ~ 5908867 (-)
mrpl39 mrpl39 coding upstream 518947 5913959 ~ 5920199 (-)
LOC113537484 NA non-coding downstream 23756 5345595 ~ 5365148 (-)
G370853 NA non-coding downstream 45824 5342755 ~ 5343080 (-)
G370845 NA non-coding downstream 138808 5249832 ~ 5250096 (-)
G370837 NA non-coding downstream 148628 5240065 ~ 5240276 (-)
G370836 NA non-coding downstream 150892 5236722 ~ 5238012 (-)
LOC113537576 NA non-coding upstream 20614 5415626 ~ 5429432 (-)
G370941 NA non-coding upstream 111100 5506112 ~ 5506317 (-)
G370942 NA non-coding upstream 113090 5508102 ~ 5508369 (-)
LOC117596170 NA non-coding upstream 115704 5510716 ~ 5518380 (-)
G371117 NA non-coding upstream 485464 5880476 ~ 5885612 (-)
G370658 NA other downstream 499523 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2535693 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2814433 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3556175 1824204 ~ 1832729 (-)
G369586 NA other downstream 3593680 1776319 ~ 1795224 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 134980 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 547027 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 620714 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 963627 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 1475554 6870566 ~ 6910546 (-)

Expression


Co-expression Network