G371121


Basic Information

Item Value
gene id G371121
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5892326 ~ 5895688 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU439651
tGTAATCCTTTAATTTAATTGACTTAAATTAAGTCAGTgacaaaaactgtttaaaaatgaatcctTTCGAGTCTATGACTTTAGAAGCTGTATAGGTTAAACCTGTACCACATCTCAAAAGGCTGAGTGCTATAGTACTGTACTGTAGTTATTTCACATATCATAATCTTATTTTTGATGAGGGCGTCTGACATTTTTTATCCAGTAGGAGAAGGACTTTATTATGATGGGTGGATAAAAAATTAAGAACATTCTACCCATTTTTCAACCAAGggctttattaaataattattttcatcACTCAGAATGACAGACATAAGCAGTTTTGAGCAGAGGGATGCTCACTTGGCCACCTCCTCCAGCTTGGGCTctgttgaattaaaaaaacagaacaaggGTTTAGTGGACTGACATCACACAAGTAGACgcaaaatataattattcatGGTGACATTATTAAACTACACAGTGTTAAATCATAAGAGGTAAAATGAAATCAAGAGCCTACAATCCTGGTTTACAGAGTCAGCTAGAAATCCTTCTGGCTAAGCACACACAATTCAGTACTCTGTTACAGAATAGGTTATTTCTGTCAATGAGGGATCAGGGATTTGTTTCTGTAATCTGTTGTATCATGCTGTACTATCTGCTGGACATATGTTATAACTGTAATAATTTTCCACCAGATGCTGCAGCACAGTTCAATGTCACTATTTTCACTGCCGATTGAGCCATGCTGTACTTAAATATCAGGTGCGACTAAAATACTGCAGATCATCAAATGATCACACAGTTGCACAGACTGCAGTTTAGTGTCTCTGCCTGGAATTGCTATAGGAGTATTACTGCACCACCACGCTGCAGATCCAAAACTGACCTGTGAATTTGAATTCGGGGAATTTAGTCAGGTCACCTCCTCCATATAACCTTTGCAGTTTGTTAATCTCTTCTGTCATGTTCTTCTGGTAGCTGGGGCCAGCATCAACCACTCCGGCTGCACTTGCTCTTGACGTTGTACTCGCGGATTTTGTCCAGAAAGAGTTTCTGTACAGGGTCCAGATCTTTAGCCCTGTTAAAAAGGACAGCAGAGATGCCGATGTTCCTGCGCAGAGTCACACTCACAGCCGAGCGGAAGACTGAGGAGAGCTGAAAGAGCCGACGGAGTGCCATGCTGTCTCTGCAAGTTGCTTCCGTTCACAGGCAATGGCCGCCTCACCGACGCAGAGTATTGTGggtatttttcttcttctccttctgctTGGTATTTTTTCCCTACCCGTATTTAATAAATCTCACTTCCGGTTAAGAGACGACTCTCTGATTCGTAAACTCCCTGTAAGGAAGAATGTACGTCCAATCATAACGAAGGAGGCGGGACTTTTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439651 True 1384 lncRNA 0.41 4 5892326 5895688

Neighbor

gene id symbol gene type direction distance location
n6amt1 n6amt1,LOC107563652 coding downstream 296231 5589772 ~ 5596095 (-)
wu:fa56d06 LOC108258903 coding downstream 335236 5549553 ~ 5557090 (-)
urp2 LOC108258299 coding downstream 479553 5409611 ~ 5412773 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding downstream 551805 5331920 ~ 5340521 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding downstream 576131 5288685 ~ 5316195 (-)
jam2a jam2 coding upstream 648 5896336 ~ 5908867 (-)
mrpl39 mrpl39 coding upstream 18271 5913959 ~ 5920199 (-)
mrpl16 mrpl16 coding upstream 68064 5963752 ~ 5969065 (-)
txnl4b txnl4b coding upstream 75352 5971040 ~ 5973439 (-)
blzf1 blzf1 coding upstream 80689 5976377 ~ 5983797 (-)
LOC117596178 NA non-coding downstream 529 5886846 ~ 5891797 (-)
G371117 NA non-coding downstream 6714 5880476 ~ 5885612 (-)
LOC117596170 NA non-coding downstream 373946 5510716 ~ 5518380 (-)
G370942 NA non-coding downstream 383957 5508102 ~ 5508369 (-)
G370941 NA non-coding downstream 386009 5506112 ~ 5506317 (-)
G371147 ercc5 non-coding upstream 97801 5993489 ~ 5994747 (-)
G371152 NA non-coding upstream 102315 5998003 ~ 5998159 (-)
G371153 NA non-coding upstream 103160 5998848 ~ 5999474 (-)
G371135 NA non-coding upstream 105491 6001179 ~ 6001613 (-)
G371134 mettl21c,LOC108429839 non-coding upstream 106150 6001838 ~ 6004790 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 345294 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 497314 5388904 ~ 5395012 (-)
G370658 NA other downstream 1002945 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 3039115 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 3317855 2566757 ~ 2574471 (-)
LOC113537623 NA other upstream 46351 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 120038 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 462951 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 974878 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 1163147 7058835 ~ 7068531 (-)

Expression


Co-expression Network