G371134 (mettl21c,LOC108429839)


Basic Information

Item Value
gene id G371134
gene name mettl21c,LOC108429839
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6001838 ~ 6004790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU439664
CAGGAtactactttttcttttccagttcTGATACTGAGACTgcaaccttgagtatcagctgatatccATAAACAGctgatattttttcctttaaaaactacttagctttaaaatgattttttttaaatgaagcactGACTTGCACAAAACCCAGCACACAAAAATGACTTATATTGgtattataataaatgtaataaagtttaaaaatataaatatgataaaaatcaatcctaaccaAAAAAATATCTCTTTATGTATCAATTCTTTTTATATGGAGAGACACTTCATTTCCAGAGACATAAcatttccagttaaaaaaaaataaaaaatcccaaatcttttccatttgttaaaCGGTCAgatcaaattcattcttttttctctgatatcAACCCAATACAGATCCTGGGTATTAGAttggtgccatctctagttCACATACAGTAAAAATACTTTTCTGTGCAGAAATAAGTccaaaaatgaaagattttggCATGAGGTTTATAGCACAAGTACCAAACAGTTTAAAAGTTATTTGAAAAACTggttcatttacattttgttaggAAGACACAAAGAAACCATTATCCACTGCCATTTAAAATATCACGTATTTTACTGTAAGACATTCTAGTGGAGAAGTCAGATGTGCAATTTGATCATTAAGACTGTATTTGCCTGCAGTTTTAACCTTTAACGGGAGTGTACGAGGTGACTAGTGGCAGGACATTACAGTCAAGAATAAAAGAGTTTTTTGATGATCCATTCTACATGTCATACTCTACATcttcatactgtacatacagtgaAATATGCATATGAAATGTAATCACAGCACCTTCTGTACTGTACAATGTGTACGTTCCATAGTCACATACTGCAAAAATCATTGCGTattctaatatttaatactttcattcatttcataatGTTAATTGGACAATAAAACTGATTCTGGTTCTTTTCATGATCCATTAACAATATTCTCACTTACAGTAATTTAATGCTGATAAAATGAACACAAGCTGAAGTTTTTATAACTCACAATTAAAGAGGACAGATAGGCACTTTGGTTGTAAATATAGTCAGAAAAGTCATTTGGAAAACTGAGCACCCTGGATACTGAGTGGTCCGATGGCAAAAGCAGTCCAACTTTTTGACATTTTGCCTGGATGAAAGCATGAGCATTACCATTTGTGCTGTTAATTTTGCCTCAGTCCTATGTTTAAGTCTTTAGTTTTAATTACAAAGTAGTAGGCCTGATATATCTAATTTATGGCTAGCaaatgggggcagtcgtggcctaatggttagagagtcggacttgtaacccgaaggttaacctgaaggtcgtgggtttgagtctcaggtccagcagggaataccacgactgaggcaGGCAAggtgaggctggtgaggcagGCGAGGTGAGACTGAggccttgagcaaggcaccgaacccccaactgctccccgggcgccgcagcaaaaaggctgcccactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacttggatgggttaaatgcagagcacaaattccgagtatgggtcactatacttggccacaagtcacttcactcactcaaattacttaaataataaggtccctggaggaccacagcgctctcaccgctgaGGCCTGGGtgcgattcctggccagggaaccaactccaggggttgtgtgcaacagtgcactctcagtgcaggtcccaagcccggataaaactggggagggctgcatcaggaagggcatctggcgtaaaaactgtgctatCAGATACAtggaccagtgatccgctgtggcgacccctaacgggagcagacGAAAGATGAACGACAACAAGTTacttaaattataaaatggtaAATTAGGTAGTACTGTTTTTGTAACTATCCGTTGACTCCACTGGTTATTTTTGTACAGCACAGCACAGTCATAGACGAGACACAGAGATTAGAAACCGGGCCCAAGGGGTTGCACCAGGAATGAAAACCGTCTGAGGTAGGAGGGTGTGTGGATTAATGCACGCTCCATCAGAGGTTCCAAAACTCGGTTTGGtcttaataaacattttaacctCGGCACAGATCCAGTTCTTCAAATTTCTTGgaaataattgaataaataatgacGTGTAGTGAACAGTAGTAGTAGCTCTGTACTAGTGGCaggctgtgagttcaaatcccaggccAGAGAGCTACAGTTAGCCGTGAAGCAACGTACTTAAACTTATACCATAAATCTGAATATAGGTTTGTGTCTGCTTTATTCAAACACACCCTATATTCAGTGTTAGGTGTTTTTGATTCATTAGATCTTTAAATGCATTCACCACTTCAGAAAATGAATGTGAATTACATTAACCTACGaaatttggaatatttttagCTGCCAAGTGAAAGTATTCAGAGCAAATTTATTAGCCCACCCACAGTGAAGTTAGGAGTTTTAACACACATCCATGAACAATAAATCCTGGACAGCTGCCATCCCTAATTCTACGCTGCAGCCCCAGATTGACTTTGTGAGCCTGAGACTTTCTTCTGCGCCCTGTACAACTTAATGTGCAGGCTGGGCAAGTCATAAAGCTCTTCCAGATGAAAGCGGGCTCTAAATCGGTCCACAAAGCTATTCTCAGGGTCTAGGCGGAACCTCATTGCCCAAAGTATAACAGTGTCCTCTGAGCACAGGTGTTCAAATGTCTCCATCAGTTCGTTAAGGTATGGGTGGGAATAAACAACATCTGCTGCCATGAGGTAGTCATAGCGACACGATGCGCGTGGGAAACGCTCTTCTAGCTGCTGCCCCCAGGTGAGCTCTGTCACATGGGGCTCGTAGCGACAGCGCCCCCTGGTGTTGCGGCTCACGTTGTAGCGCAGGTTACCAAGAACATCTGGGAGGTCGGTGGACGTCACTTTTGCGCC

Function

symbol description
mettl21c Enables heat shock protein binding activity and protein-lysine N-methyltransferase activity. Involved in protein methylation. Located in nucleus. Part of protein-containing complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439664 True 2953 lncRNA 0.41 1 6001838 6004790

Neighbor

gene id symbol gene type direction distance location
blzf1 blzf1 coding downstream 18041 5976377 ~ 5983797 (-)
txnl4b txnl4b coding downstream 28399 5971040 ~ 5973439 (-)
mrpl16 mrpl16 coding downstream 32773 5963752 ~ 5969065 (-)
mrpl39 mrpl39 coding downstream 81639 5913959 ~ 5920199 (-)
jam2a jam2 coding downstream 92971 5896336 ~ 5908867 (-)
LOC113537602 tmem255b coding upstream 131717 6136507 ~ 6160962 (-)
cenpe cenpe,LOC107751066,LOC107573438 coding upstream 157324 6162114 ~ 6190394 (-)
grk1a grk1,grk1a,LOC107748333 coding upstream 186838 6191628 ~ 6200180 (-)
tfdp1b tfdp1 coding upstream 198907 6203697 ~ 6222555 (-)
tmco3 tmco3 coding upstream 221263 6226053 ~ 6238578 (-)
G371135 NA non-coding downstream 225 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 2364 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 3679 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 7091 5993489 ~ 5994747 (-)
G371121 NA non-coding downstream 106150 5892326 ~ 5895688 (-)
G371454 NA non-coding upstream 524607 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 559059 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 803703 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 862954 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 875080 6879870 ~ 6881780 (-)
LOC113537623 NA other downstream 49525 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 454806 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 606826 5388904 ~ 5395012 (-)
G370658 NA other downstream 1112457 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 3148627 2843212 ~ 2853211 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 10936 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 353849 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 865776 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 1054045 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 1352481 7357271 ~ 7478509 (-)

Expression


Co-expression Network