Gene
RNA
| Item | Value |
|---|---|
| gene id | G371153 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 5998848 ~ 5999474 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU439687 | True | 627 | lncRNA | 0.41 | 1 | 5998848 | 5999474 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| blzf1 | blzf1 | coding | downstream | 15051 | 5976377 ~ 5983797 (-) |
| txnl4b | txnl4b | coding | downstream | 25409 | 5971040 ~ 5973439 (-) |
| mrpl16 | mrpl16 | coding | downstream | 29783 | 5963752 ~ 5969065 (-) |
| mrpl39 | mrpl39 | coding | downstream | 78649 | 5913959 ~ 5920199 (-) |
| jam2a | jam2 | coding | downstream | 89981 | 5896336 ~ 5908867 (-) |
| LOC113537602 | tmem255b | coding | upstream | 137033 | 6136507 ~ 6160962 (-) |
| cenpe | cenpe,LOC107751066,LOC107573438 | coding | upstream | 162640 | 6162114 ~ 6190394 (-) |
| grk1a | grk1,grk1a,LOC107748333 | coding | upstream | 192154 | 6191628 ~ 6200180 (-) |
| tfdp1b | tfdp1 | coding | upstream | 204223 | 6203697 ~ 6222555 (-) |
| tmco3 | tmco3 | coding | upstream | 226579 | 6226053 ~ 6238578 (-) |
| G371152 | NA | non-coding | downstream | 689 | 5998003 ~ 5998159 (-) |
| G371147 | ercc5 | non-coding | downstream | 4101 | 5993489 ~ 5994747 (-) |
| G371121 | NA | non-coding | downstream | 103160 | 5892326 ~ 5895688 (-) |
| LOC117596178 | NA | non-coding | downstream | 107051 | 5886846 ~ 5891797 (-) |
| G371117 | NA | non-coding | downstream | 113236 | 5880476 ~ 5885612 (-) |
| G371135 | NA | non-coding | upstream | 1705 | 6001179 ~ 6001613 (-) |
| G371134 | mettl21c,LOC108429839 | non-coding | upstream | 2364 | 6001838 ~ 6004790 (-) |
| G371454 | NA | non-coding | upstream | 529923 | 6529397 ~ 6536004 (-) |
| G371487 | NA | non-coding | upstream | 564375 | 6563849 ~ 6566945 (-) |
| G371595 | NA | non-coding | upstream | 809019 | 6808493 ~ 6815071 (-) |
| LOC113537623 | NA | other | downstream | 46535 | 5942039 ~ 5952313 (-) |
| LOC113537235 | son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 | other | downstream | 451816 | 5529992 ~ 5547032 (-) |
| LOC113537294 | NA | other | downstream | 603836 | 5388904 ~ 5395012 (-) |
| G370658 | NA | other | downstream | 1109467 | 4843329 ~ 4889381 (-) |
| LOC117596167 | NA | other | downstream | 3145637 | 2843212 ~ 2853211 (-) |
| tpp2 | tpp2,si:ch73-244f7.4,LOC107665822 | other | upstream | 16252 | 6015726 ~ 6033393 (-) |
| LOC113537742 | LOC108258591 | other | upstream | 359165 | 6358639 ~ 6363203 (-) |
| pspc1 | pspc1,LOC108258933,LOC108434730 | other | upstream | 871092 | 6870566 ~ 6910546 (-) |
| LOC113537271 | LOC108258282 | other | upstream | 1059361 | 7058835 ~ 7068531 (-) |
| LOC113537388 | arhgap6 | other | upstream | 1357797 | 7357271 ~ 7478509 (-) |
