LOC113537742 (LOC108258591)


Basic Information

Item Value
gene id LOC113537742
gene name LOC108258591
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6358639 ~ 6363203 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU439992
GATAAaggcaaaaagagaaaatctgtCAGTAATAAAGCATTTGAGCATTTATTCAATTGTGATGAAGTTTCAGTTATGGAGTTTCTTCTATTTCAAACTGCACAGCTACTACCTGCTGACCATCGCTGACCAAACAGTTTTCCAGTCTGATCCACAAGCCAAGGCCATCTTTATCCGGCCTAAACATGCCAATACATTCTTTGTGGAGGAAATTCTAAAGGGCCATTTGGAAAGAGAGTGTTATGAGGAAAGATGCAACAAGGAGGAGGCCAGAGAGGTCTTTGAGGACAAC
>XM_034300225.1
GTTCTTGTAACAGCAAAATATATTGGGAGGCGAATGTGGCTAACAGAGCAGAGATAAaggcaaaaagagaaaatctgtCAGTAATAAAGCATTTGAGCATTTATTCAATTGTGATGAAGTTTCAGTTATGGAGTTTCTTCTATTTCAAACTGCACAGCTACTACCTGCTGACCATCGCTGACCAAACAGTTTTCCAGTCTGATCCACAAGCCAAGGCCATCTTTATCCGGCCTAAACATGCCAATACATTCTTTGTGGAGGAAATTCTAAAGGGCCATTTGGAAAGAGAGTGTTATGAGGAAAGATGCAACAAGGAGGAGGCCAGAGAGGTCTTTGAGGACAACGAGAAAAAGCTTTGACCTAGGAACTCCTCTTTCTGAGAATGTGACATAATTAGATGGAGATCAGTGTAAACCCAATCCTTGTCAACATGGTGGCACCTGTAAAGACAAGATAGGAGGCTATAGCTGCAAGTGTACTGACATGTACACAGGACATAACTGTGAAAACGATGTTTCTGAATGCCCTTCTGGAGGCCCTCTGGTTTGTGAACACTACTGCAGACCCTTACCTGAATCATACCGATGCTTCTGCGCCAGAGGCTACAGCCTTAGAGCTACACACCTTGGGGATCCATGTGGGAATGTCAGGGTCTCATCTGACTCTACCAGTAGGAATATGACTCAAAATGACCCCATCTGCCCACAAGGAAAATGTCCATGGCAGGTGACCTTTGTGGATGTCTTTGGTGATGTAATCTGTCATGGCGTGATCCTTGGAAGGAGGTCTATACTCACTACAGCTGCATGCATGACAACAGACAAAGATCTTTCCTTGATCATTGGCCACTCAAATGAAAAGATAAATGCTTCTCAAGTGACCAAAAGGACTCTTCATAATAGGTATTTGACTCTTGATCCTGATGACGACTTGGCTGATTGCTTTGGGTCCGGGCACCATCCAGCTCTGCCTCCCAGAAAAAAGACTTCAGAGAAAACAGCTTGATGAAAAGTGGTAAGTGGGTGGAGCCAATAAACTTTCATACCTCTCACTGGACATCTGCCATTCCAAACTCAACCTGAGCTTCTGCTTGACCAATAAGATGTTTTGTGTGAAGGAGCGAGAGCCTGAATGTATTGTAAGGAGACTGTCACAACACAAAGAGCGTGATCTTACATCTGGGTCTCCTGTGGCCACAGTGGAAGGAAATACAGCTTTCCTAACTGGACTGTTCCTCTCCCAAAATGACTGCAGTCAGGAATGCGTGTTCACCAAAATTTTGAGATATCTACCGTGGATCCGCAAACTTCTACTGAGAACCGAGGCAGTGCAACATGACACATTTTGGCAGAAGCTTAGTCTCCAGGATGCAACTGTTTTAACAAGATTACATCAATTAACCTGCTTTCAGAATGAACctgttgtttcattttgtgctaaaatgcacattttaaagACTTCCTC
>XR_004577329.1
GTTCTTGTAACAGCAAAATATATTGGGAGGCGAATGTGGCTAACAGAGCAGAGATAAaggcaaaaagagaaaatctgtCAGTAATAAAGCATTTGAGCATTTATTCAATTGTGATGAAGTTTCAGTTATGGAGTTTCTTCTATTTCAAACTGCACAGCTACTACCTGCTGACCATCGCTGACCAAACAGTTTTCCAGTCTGATCCACAAGCCAAGGCCATCTTTATCCGGCCTAAACATGCCAATACATTCTTTGTGGAGGAAATTCTAAAGGGCCATTTGGAAAGAGAGTGTTATGAGGAAAGATGCAACAAGGAGGAGGCCAGAGAGGTCTTTGAGGACAACGAGAAAAAGCTTTGACCTAGGAACTCCTCTTTCTGAGAATGTGACATAATTAGATGGAGATCAGTGTAAACCCAATCCTTGTCAACATGGTGGCACCTGTAAAGACAAGATAGGAGGCTATAGCTGCAAGTGTACTGACATGTACACAGGACATAACTGTGAAAACGATGTTTCTGAATGCCCTTCTGGAGGCCCTCTGGTTTGTGAACACTACTGCAGACCCTTACCTGAATCATACCGATGCTTCTGCGCCAGAGGCTACAGCCTTAGAGCTACACACCTTGGGCTCAGGATCCATGTGGGAATGTCAGGGTCTCATCTGACTCTACCAGTAGGAATATGACTCAAAATGACCCCATCTGCCCACAAGGAAAATGTCCATGGCAGGTGACCTTTGTGGATGTCTTTGGTGATGTAATCTGTCATGGCGTGATCCTTGGAAGGAGGTCTATACTCACTACAGCTGCATGCATGACAACAGACAAAGATCTTTCCTTGATCATTGGCCACTCAAATGAAAAGATAAATGCTTCTCAAGTGACCAAAAGGACTCTTCATAATAGGTATTTGACTCTTGATCCTGATGACGACTTGGCTGATTGCTTTGGGTCCGGGCACCATCCAGCTCTGCCTCCCAGAAAAAAGACTTCAGAGAAAACAGCTTGATGAAAAGTGGAGCGAGAGCCTGAATGTATTGTAAGGAGACTGTCACAACACAAAGAGCGTGATCTTACATCTGGGTCTCCTGTGGCCACAGTGGAAGGAAATACAGCTTTCCTAACTGGACTGTTCCTCTCCCAAAATGACTGCAGTCAGGAATGCGTGTTCACCAAAATTTTGAGATATCTACCGTGGATCCGCAAACTTCTACTGAGAACCGAGGCAGTGCAACATGACACATTTTGGCAGAAGCTTAGTCTCCAGGATGCAACTGTTTTAACAAGATTACATCAATTAACCTGCTTTCAGAATGAACctgttgtttcattttgtgctaaaatgcacattttaaagACTTCCTC

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU439992 False 292 lncRNA 0.41 2 6362554 6363151
XM_034300225.1 True 1464 mRNA 0.44 7 6358639 6363203
XR_004577329.1 False 1366 misc_RNA 0.44 8 6358639 6363203

Neighbor

gene id symbol gene type direction distance location
LOC117596162 LOC108258591 coding downstream 28364 6326777 ~ 6330275 (-)
cul4a cul4a,LOC102780633 coding downstream 41180 6295380 ~ 6317459 (-)
lamp1a NA coding downstream 65892 6279824 ~ 6292747 (-)
tmco3 tmco3 coding downstream 120061 6226053 ~ 6238578 (-)
tfdp1b tfdp1 coding downstream 136084 6203697 ~ 6222555 (-)
LOC113537543 LOC108258588 coding upstream 609 6363812 ~ 6380175 (-)
f7i fa7 coding upstream 9172 6372375 ~ 6378994 (-)
f7 LOC108258589,LOC108429788 coding upstream 17126 6380329 ~ 6384799 (-)
f7l LOC108258590 coding upstream 21696 6384899 ~ 6392466 (-)
LOC113537540 LOC108258592,LOC108429813,LOC107739159,LOC107739162,LOC107751098,LOC107694465,LOC107570071 coding upstream 40059 6403262 ~ 6404088 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 353849 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 357026 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 359165 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 360480 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 363892 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 166194 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 200646 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 445290 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 504541 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 516667 6879870 ~ 6881780 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 325246 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 406326 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 811607 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 963627 5388904 ~ 5395012 (-)
G370658 NA other downstream 1469258 4843329 ~ 4889381 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 507363 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 695632 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 994068 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1355060 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1549007 7912210 ~ 7993096 (-)

Expression


Co-expression Network