G371454


Basic Information

Item Value
gene id G371454
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6529397 ~ 6536004 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU440057
agaaatttggtttactgtaagcttataataatattagcttaagaggaatataatcaaaatattttcactaatGCGCATTTcgtgcatggattactgcacttttatatatggcaTATGCTGTGAAGTTTAAATTGCTCATTATTACGTTtatagcatttagcagatgcccttatccagagcgtcttatagaagtgctttggagtctctacCAAAAACACATCAGGGACTAAGGGTAGTATCAAGAAAACTTTGAAAACcagacattttatatttctggcattaattaaagaatacgaaaaataaagaaattgagCCAACACAAACTTATAAATGAAGACAACATtaatcataattattaattGTTCAATTATTTAAGAAAGGACACCCTGTAAACGGAGGACAGGCGGTCTGGCTGCATAGAGCTGTACAAGTGCCTCAGCTGATGAAAGATTTAGTGCTtgcttatattatatattattaaatatttttaccggcatagaagtgagtcaaaataacttccacttctgcctttcagtCTTTACTCTCATCGTTCATTCCCCTCTCctagctgtctgtgcacttgaccttttatgagGAGATTACACAAAGAATTTTGACTTCAAAACGGCCAAATTCAAATCACGCAACAAAACTGAAATGCTGGGTTGCAACTATGTTGCTCCAACAGAGAGTCCCAGCTCCATcatataaaacattaatgcCTGAATATTTCttcaatgaaatgaaaataatatagaAGGGATTTTGAATGATTATTAATTTGCTGTTTGCATACTATCAACTGTACACATTCCCAGCCCCTGTACTTACCCAAAACCACAATCACAGTGGTATCCGATTGTTTTCCAACGCTGTCACCAGGAATTTTTACTTCGCACTGAAACACTCTACTGTCCTTTGACGTTAGAGCTTTGAGTGTCAAGTTCGCCCATCCTTTAGCAATGTCTACCTGAAGTGAAGCTCGGTCAGTATATGCAGCATCGATGTCCAGttgattttctgcatttgcCAAGTAGTAATATGTGAGGATTGCAATATCAGAATCGTCAGGATTATCTGGATGTGCCGTCCATGAGATGATGATTGATGGGTTGCTTGCTTTCTGGGGTTTGAAGTTGCATGGTATAGTGCCATTGCCACCACGGGTTAACTCATAAGTTTGGAGTGGGATGTCAACGTTTAAAGATGAAGTCAGGTGGATCACCACAAAAAGCGAATAAATTGTTACCAGCATGTctgcattaaaatgaaataaagccCTTCTTTGGAAaaccaaaaaatacaaaaaaaaaaaaaaggtagatgCTACTTCAGGTGCGCGCGCTGCTGTTTTCGGCTTGAAATAAGAGCCGCCGAAGCCCCGCCCACTAGCCGGTCTCATCTTGTTCGTGTCGTCAGGTGTCTTGTTAGCACTTGAGCTAAGTTTCCACGGGGGATACATATAAACACCTACACACTCTTCCTTTTTAACAGTGTTTGTTAAAATTCTGATATATAACATTATGTTTGCTCTTTATCCTCAGCATTTTAATAAGCATACATTTAGTTGTTGAATGTGTACACTGAAGATGTGGGCAGAAACCGGAAGTGGTTTCGAGCTCACATGCCAGCCGAGATGTGTAAAACTGGTTTGGTGAGAGTTAGACACTGAGgcagggcaacacacacacacacaca

Function

NR:

description
zinc-binding protein A33-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440057 True 1698 lncRNA 0.39 3 6529397 6536004

Neighbor

gene id symbol gene type direction distance location
LOC113537739 LOC108258596 coding downstream 28784 6468517 ~ 6500613 (-)
dusp27 dusp27,LOC102309085 coding downstream 67846 6451575 ~ 6461551 (-)
LOC113537523 pou2f1 coding downstream 79478 6432009 ~ 6449919 (-)
LOC113537540 LOC108258592,LOC108429813,LOC107739159,LOC107739162,LOC107751098,LOC107694465,LOC107570071 coding downstream 125309 6403262 ~ 6404088 (-)
f7l LOC108258590 coding downstream 136931 6384899 ~ 6392466 (-)
LOC113537384 prss23,LOC107570079,LOC106575973 coding upstream 70596 6606600 ~ 6610907 (-)
LOC113537292 ccdc81 coding upstream 105060 6641064 ~ 6660087 (-)
hikeshi hikeshi,ck073 coding upstream 124781 6660785 ~ 6666073 (-)
eed eed coding upstream 132219 6668223 ~ 6675921 (-)
nfkbiz nfkbiz coding upstream 155660 6691664 ~ 6699031 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 524607 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 527784 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 529923 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 531238 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 534650 5993489 ~ 5994747 (-)
G371487 NA non-coding upstream 27845 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 272489 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 331740 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 343866 6879870 ~ 6881780 (-)
G371634 NA non-coding upstream 355762 6891766 ~ 6901343 (-)
LOC113537742 LOC108258591 other downstream 166194 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 496004 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 577084 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 982365 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 1134385 5388904 ~ 5395012 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 334562 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 522831 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 821267 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1182259 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1376206 7912210 ~ 7993096 (-)

Expression


Co-expression Network