G371625


Basic Information

Item Value
gene id G371625
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6879870 ~ 6881780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU440265
TTTACTAAGCAAGTtcaacatgaaattaaaacagcAGTGCTGTGAGTGCATCCATCTTGGAATTGTAACATTCACATGACAGTCTTACATAATCATTTTTCGAAACCTACATTTTCCCTTGTCCAAAAAATTATgctaaaatgaaatttacagaTTAATCTACTTCAGCATGaatttgaaaagatttttttttttcaagtttacCTTTGTTATTGAGGACTAGGCCTTGCTCCAAAATCAAGGTCATCAGTTCTTGCTCAGCATTTTTCTGCATGCCGTAGATTATGATAGGAAGTTATTTGTATCATGCAGTACACCTGCCTGAAAGCATCTGCACTCGTGTTTCTCCACTCAGTTATTCAggttttccttttaatttgtcacatgtCTGTAGCTGTTTGTGTGAATGAAATGACAAAGTAATGATGGATGATAAATGATGTTGATTACTAGCCTTTACAAATTATGTGACTAATAGACTTCAAACAGTGATATTGCCAGAAGCATTTATATAGAACATTTCAAAAACTGGGTTCTCTTTATTACCTTTGACACTGCCAAAGGTAGTCACCTGATAGTgatctttatttacttttcaattGTCTGTCTTGAAAGTTATGTTTCCCTTTGTAAGATTTTTAAGGTATGATATTATTAACCATGACATGGCCATTTTTCTGGGGAAGGCAGAACTCCATACGTGACATCCGCTCTTGTAGCATGTGGATCTTCAGAACAAGAGAACGGTAGTATCTATAACTATGGCACAGAGATTTCAGTCCTAGTTCTGGACAGCTTGGGACAGAACCAAACAACATGGAAGAAACTGGGGAAAAAGAGACATGATGGAATCAGCCACCAGGAGATTCAGGCACAAGAATACTGGTATCAAATGTAGTGGAAAACAGAAGGCATTCTGCATAGTTCCAGTCCCTGAGGAAGGGTGTACCCGCACTGACTGCAAACCCTTACTCTGAAGCAGCTCTGTCCTTTACTTGCATACCAAGTGGACTCGAGCATTTCGCCTGTAAGCATGGGAGTCCTTAACGTTTTATTCCACAGACCATATTTTCAACTAAATAAGATGGGCATCATGGTctgaatgctgttttttttttttgttttgtttttagaccCTCAATGCCAGCAGCATTGTTTCTATCTGAATAGGGAATAAGCTCAAAGCCATGCAGGTGGATGCCCCAACATTGTTCTGAATTCAGTGGAAGAAAGAGTATAAAACACTGccttgagtaaaagtactgctactATAGTAAGAATATGAGTAAAAGTAGTGATCAAGAAAATTGCTCAAGTAACAAGAAGTCgtctgctgggaaaaaaaacactttacagtTTACACAAGTCTACAGTTGATGCAACTACTCCAAAAATGTTCTATAACTGAGGAATgcaaatttaaacaattaactaaccaagtgagctatgctgaagtgaacaccacctcAATTATCAATAGTAAGTAAATATAGTAAATGTttgctggctagctaacttagccaaatGTAGCTTGCTATGTTTGCTAGATAACTAATTCATTCATGTATCTAGCTACATAGTTAGCTGTCTGGCAAAGATGCCACTGACACATTATCCTGAGCTGTACCTATAAGCTGTAGCagcagatacactatatggccaaaagtttgtggacaactgaccatcacacccatatgtgcttttttgaaCATGTCATACCAAAtgtagtcccccctttgctgttataataaccgctgctcttctgggaaggctttccactagattttggaatgtggctgtgtggatttgcctattcagccacaagagcattagtgaggtcggtgCTGATATGGGGCGCAGTTggaattccagttcatccctaTGAAgatgttcagtgtggttgagatcagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440265 True 1911 lncRNA 0.38 1 6879870 6881780

Neighbor

gene id symbol gene type direction distance location
arhgap20 LOC108259036 coding downstream 17767 6835427 ~ 6862103 (-)
mxh si:dkeyp-110c12.3,LOC108258858,LOC108434714 coding downstream 83731 6791160 ~ 6796139 (-)
LOC117595692 LOC108258862,LOC108258860,LOC108258859,LOC108258861,LOC108429797,LOC108261765 coding downstream 100580 6772355 ~ 6779290 (-)
LOC113537509 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765,LOC108258858,LOC108434714 coding downstream 109152 6742587 ~ 6770718 (-)
LOC113537618 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765 coding downstream 146514 6721328 ~ 6733356 (-)
LOC113537750 fgf14,LOC108258297,LOC108434733,LOC105911936 coding upstream 76240 6958020 ~ 7025006 (-)
si:ch211-91p5.3 NA coding upstream 187398 7069178 ~ 7082854 (-)
LOC113537541 c26hxorf38 coding upstream 203146 7084926 ~ 7090530 (-)
pcdh8 LOC108258318 coding upstream 211022 7092802 ~ 7096706 (-)
sugt1 sugt1,LOC104941757 coding upstream 274800 7156580 ~ 7181482 (-)
G371632 NA non-coding downstream 11910 6867744 ~ 6867960 (-)
G371595 NA non-coding downstream 64799 6808493 ~ 6815071 (-)
G371487 NA non-coding downstream 312925 6563849 ~ 6566945 (-)
G371454 NA non-coding downstream 343866 6529397 ~ 6536004 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 875080 6001838 ~ 6004790 (-)
G371634 NA non-coding upstream 9986 6891766 ~ 6901343 (-)
G371787 NA non-coding upstream 269658 7151438 ~ 7153159 (-)
G371793 NA non-coding upstream 301396 7183176 ~ 7183386 (-)
G371929 NA non-coding upstream 529201 7410981 ~ 7415018 (-)
G371964 NA non-coding upstream 586009 7467789 ~ 7468460 (-)
LOC113537742 LOC108258591 other downstream 516667 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 846477 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 927557 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 1332838 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 1484858 5388904 ~ 5395012 (-)
LOC113537271 LOC108258282 other upstream 177055 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 475491 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 836483 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1030430 7912210 ~ 7993096 (-)
cars2 cars2 other upstream 1187622 8069402 ~ 8084539 (-)

Expression


Co-expression Network