pspc1 (pspc1,LOC108258933,LOC108434730)


Basic Information

Item Value
gene id pspc1
gene name pspc1,LOC108258933,LOC108434730
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6870566 ~ 6910546 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU440266
TTGGACTGGAGGATTTACATGGGGAGGTTGgctaatataattattactgtTTCCTGGGAAGAGCAAATTTTCACAGCAATAGCTTGTCTTTTGTCTACTAATAACTCACTACTCAGTCTTGACTATAAATTTTATTACCATAGGAACAGAggcataaacataaacattgcTGTCCCCAAGACTATGTTGCGTGACACTTGCAGGCAGAGGAGCCAAACCACATAGGCTGTAGGGAAAATTCAAATCAACATCTTTAAAACAATGCTGTGGGCCAAAGAACTCTCAACagtgtacactcacacacttaggAGCATCTGtaaacctgcacatttatgcaattatccaatcagacgattatgtggcagcagcgcagtgcaaatattatgcagatacaggtcaagagcttcagttaatgtccaAATCCACATCAGTTCAGCTAATGTCCACgtcagaatgagaaaaaaaatgtgatctcaattTCGTTGAcctggcatgattgttggtgccagatgggttggttgaagtatttcagaagctgctgatcaTCTGAGGTTTTTCATACACCACAGTCTCtagactttacacagaatggtgcaaaagccaaaataaataaataaataaataaataaaattcaatgcACAGCTGTTCTGTTGAGAGACATCAGAAGAGAATGGTCAGCAGACtgtttcaagctgacaggaaggctatagtaaTTCCATTAACCAATCTTTACAActgttgtgagcagaaaagtatctcagactGTACTCATGTtggttgaagattggaaaaaacatATCCTGGTCTTTTACGAATCTTCAgctctccagtttcagtgaacctgtAACCACTGTAGCCGCAGGTTCATGTTCGTTgatgataggagtggaacccaatgtgatcTTCTTCTGTTGtggcccatctacctcaaggttctctgttttgtgctttcttagatgcttttctgctcaccatggttgtaaagagtgattgagTTACCATAGTCTTGTTGTCACGTCAAAACATTCTGGCTGTTCTCGTCAGAACCTGTCacttactggattttttttttttcttttttcccctctgatgttttgctttttgcaccattttgtgtaaacgcTATAGACTCTTGTGTGTTCAGTCAGAATCCCAGGAACTCAGCAGTTTTCAAGTACTTAACTCAGCCTGTCTGGGAACCACAAAAATTGCATAAAAGAGTAGGTGTTGTGACAAAATTTTAGTTGTTTTGTATTGGTGTATGTTCTTAATGTTTGAAAAGCTTTGAAAATTAGGTAAGATTGAGGTTAACATTTGCTTGGTTGCTGTTTCACCAATTCCAGCTGATTTAAGAAGCTACGCTGATTAACACAGCATGAATGAATTATTGCTTaattaaagcagaaataaaTCTCTCTTATTGACTGTTTTAAAATTGCCTCTGATGCAAAGAatattgccaaaaaaaaaaaacagtattgcCAAAtgtcctgtttatttttgctccgctagtggaaataaatcctgaagaagccacactcactttataccGCGTCAGCTAGctcgctagctagctcacattgatttgtacttTTCCTGTCTGTTAAAATTAGtgtctcttcttccttttcatcttcaaatGACAAGCTTTCttattttaagccaaaagttatattcctgaaatgtatcatttgccatgtcctctgatgtcactaacactactgtagtatctgttttgaactaggaagtggtACGTGTCGAgcacagacaatatccaaactccaaaaagtttacatacaccaagttgaaTGTCTCTGTAAAcagtttgaaatatttcagaaattgatgtaatgacatttagaagcttctgattggtcagttgtcATAATTAGGAATTAATTGGGAGCACCTGTAGCTGTAAAAGGACTTTATAAACAGTGCCTTTTTACCCTTGATAGCATgagaaaatccaagcaactcagccaagatcTCAGAAAAAATCGTGGACCTCCACAAGCCAGGTTCCTCCTTTGGATCATGCATCACACTGTGGGTCTGGcacacttaaaaatatatatatatatagatggcatcatgaggaaggaggattatctagaaatactgaagcaacaccgCAAGAAATCAGCCAGGAAGTTAAAACTTTGTTGTAcctgggtcttccagcaggacaacaattctccaaagttgtaacaaaatggcataaagacaacaaagtgaaagcaTTGGAGTGGCcgtcacaaagccctgacccgaacttgtggactgaactgaaacagtgaggaggcccacaaaccttactaagttacaccagttctgtcagggaATGAGAAAAAATTCCAGAAAAGTAGAAAGCTACCCCAAGAGTTTGCCTAGCCTAGGTGTAACTAGGTAACTTTTGGCCTcagctgtattttatatatattttgtcttGAATGTTTGTTATGCTTACTGCACAGGTTCCCAGTCCTAGTCCTGGAGTATCCCTTGTCCAGCACATTTTAGTGATTTCCATGCTCCCATCACACCTGACTCAGTTAGCTCATTTAGCAGCCCTTCCTTGAGTTGAGGTGTTTGGCCCACTGCATTTATGTGTCAGTAGACAATAATCCcaacattgtttatttatttaaatttaatgttacaaAAAGTTTTTAGCACCACCCCTTGCTGCCTAGGCAggagcatatttttttttttaaagtaatgatatgtatataatatattaagtTATAGGGCACACATCTGATAAAAAGATGTAGTCTATACATCTTTTTTACAGTGACAAcctcaggatttgaactctactgaaaacctgtggtctgaattgaagagggaAATTCACATGCACAAccctaagaatataaaggagctcGAAATATTCTTCATGGAGGAGTGGTTCAAGAGCCCCCTACAATTGTCCCAAATCTTGCTAGACTTTGcaggaagagactcagtgctgttattctctccagggcaGGCATCACATAATTGTAAGGgtaccaataattttgaaacgaTAATTTAAGTAATACTTAAAATGTGTTGAGTTTGGAggaaaaatctttaaataaaactgtacaatgtTTCTGTATGTTTAAGCTTAAAATATTACTGCCTGCTATTCTTTTTATATACACAgatttgctatttttatttatttatttatttttcttttttattctggaGCCCACTGTATGTCACTTACATTTGCACAACATTTTTATTGGCATTTTTAATCTAGAACACTAGGCTAGTAATAGATTGGCtggtttaaataattatttttgttttcttttgcccTAGATTGATGCAGGCCTGTACATGGTTTGGTAGAAACGCTTCGAAGATGCTTACAAGGTGAAATGATATGCAGCCAATTGCagccaatctctctctctttctttctctctctctctatctacctgtctgtcctttttctttctatctgtataaaaaaatactaatctAATTAGTTCAAACAAGGAAACCATGAGGTAAGTAGTATTTCGCTTGTTCATAATTTACTGTTCCACAATAAAGAGAAGTTTTGCATGGCTATTTTAGTAGCCCAGTAACATATCTTTCCTCTAACCAATTTGATTTCCACTAGGTGGTGCCATAGAAGTAGGAACAAATGCCCTAAACAGGCAAATAACAGTAAAGGTACTTGTATATTAGTAGTAATGAATGTCAAGATCcattctgagatgtttctgGAAAGAATAAATGCTTAGTCAGTCATAAACTAATCTGCATTTTCTTATGCAACACATGCGgttaaaagtaatttttaaattcagat
>XM_026932254.2
ATGGCAAACCGAAACCTTAAGCATGTAAACATTCAGAACAGTTCTCCATCTCCGAAGCCTCAAAATCCGAATCGCAACCCGGACTCTCCGTCCACGGAGCGCGTGCAGAAGATGGAGGGAGCGACGCCATCGCCTAAAGTCACAAGCCCTCAGCCAGAAGCAGAAGGCAGCAGCGAGCCTCGGGAAATGACTCTGGACCTGAAGAGTTTCAGGAAACCGGGagagaaaacatttacacagaggTGCAGACTGTTTGTCGGCAATCTTCCTACTGACATTACGGAGGAAGACTTCAGAAAGCTGTTCGCCAAATATGGCGAGGCTAATGAAGTATTCATCAACAGAGACCGAGGATTCGGATTCATTCGACTGgaaacaagGACATTAGCAGAGATTGCCAAAGCAGAGTTGGATGGAACAGTGTTGCGGAACAGGCCAATTCGCATCCGGTTTGCCACACATGGAGCTGCTCTCACGGTTCGAAACCTTTCACCAGTTGTTACCAATGAGCTCCTGGAGCAGGCATTTTCACAGTTTGGGCCCGTGGAGAGGGCAGTTGTGGTGGTAGATGATCGTGGCAGACCCACAGGTAAAGGCGTTGTGGAGTTTGCCAATAAGCCTGCTGCACGAAAGGCTCTTGACCGTTGTGCTGATGGAGCCCTTTTACTTACTACGTCTCCGCGGCCAGTTATTGTTGAACCAACAGAGCAGtttgatgatgaagatggtctTTCAGAAAAATTACTGCAAAAGTCAGCACAGTATCACAAGGAAAGGGAGCAGCCTCCACGCTTTGCCCAGCCAGGCACCTTTGAGTTTGAGTACTCGTCACGTTGGAAGGCGCTTGATGAGATGGAGAAACAGCAGCGGGAGCAGGTGAACAGGAATATCCAAGAGGCCAAGGAGAAACTGGAGGCTGAGATGGAGACAGCAAGGCACGAGCACCAGCTCATGATGATGAGACAAGATCTCATGCGACGTCAAGAAGAGTTGCGCCGACTGGAGGAACTGAGAAACCAGGAACTCCAAAAGCGCAAACAGATGGAGATGAGACATGAGGAAGAGAGGCGGAGACGTGAGGAGGAAATGATGCGCCACAGAGACCAGGACGAAATGAGACGTCAGCCTGATGGTTTTAAACCTGGCTTTATGGATAGCAGAGAACAGGATATGAGAATGAGTGAAATGGGTGCCCGTGGAGCCGTTAATATGGGAGATTCTTTTAATCCTGCCGCTGCTGTTAGCGGTAACCAGGGCCCTGCTCAAATGATGGGCATGGGCATGTCAGGCCGGGGTGGAGCCATGGGGCCAGAGGGATCATCAAATATGGGGGCACCTCTCATTCAAGATAACGGAAATATGCGTAATGAAAGATTTTCTCAGGGAGCACCTGCTCAGATGGGTTCTTCAATGGGTATTCGACCAGGTGTTGATTCCCCCCAGCAACAACAGTCACCTGTGATTGGTGGTGCAGGACCTGTGCCTCCTATGGGTGGTCCAGGTGGATTTGGGCGAGGAAATCCTGTTGGGGGAAACTTTGATGGGCCCAACAACAAGCGCCGTAGATACTAGGCTTTTCTGTCATGATAGTGGATTATAGTCTTTGATCCAGAACATCTAAACTCTTGCTTATGGATATTATTCATTTCCATGTCCTTTTCAGTGGCGCTGCTCTCAGGCAGTCAATAGTGTTGACCTTTGTTCCAAGTGTGTGAGACATAGCATGAAccatttttaatcatgaaatgaaaacagagcTCAGTTTTAAGACTGACATTGACTTAACTGCATATGCTGTAGGGAAAGTCATATTCTGGTCAGATGGAGCTTCTGAGGGGTTGCAGTGCTTCTGCTTAGTCCTTTTCCTACACTTTGCTTATTGTTGTAAGATCAGTCAAAGCTGGAAGAAATTTAATAAATCTACTTAATGACCATATCTGTACTGAGCTAAACAGTTTACCTGATTATATGGGACTTTATAATTTGATATGCTTCTGTGCAGTTCATTTTGTTCTAATCAGAACCTTCTATTTGACAAGACATGCTGGAAACAAATTAGTAGAATGAGAGCAGTATCTATTTTTTGGTTTCCTGGTTTCTGTATTTGCACAGTGTGAGTGGTAAGATCTATGTTACGCAGAAACCAAGAAATGGAACAAAATAAATGAGGCTGTGTGAGAATCTGAGTTTGCAAAAAGCTCATTTCAAGTAACTACTTTTCTGTGGAAGCAAAGCAAAAAATACCTATACACTAATTATTAACAGTGTCTTATATACAGCatgttttaaacagaaacatattTCCAACCAAGAGATTCTAAGAATTTGTTTCATATAACATCTTTAAGTCCCATGTTATTAGATAAATGTTTTAGTGTAGCTTTTTGGCAAGAGCATGTTGCTTGGGCCATCCTATTTGTACAACATCTGATTTACAGTGATTGTTTTTTAGACTACTTCTAGTATATGGATCGTGACACTAGTGTATGTCATGTAGAATGTGCATGCCTTTTAGCAGTCGTTTTTGTTTtagtaaatattatgaatatgccaggttgttttcctttttcttaaaTGGCGGTTATTGAATAAAAGTACTTAAAAAGTTA
>XM_026932255.2
AGTCTGCGCAAGCGCAGTTGAGAGCAGCTCGGCCGTTGCCATTGTAACGTTAGACAGGAAGAAGAGACAGGTTAATTGTTGTTATTGTAGGCAGTCATAAAGTGGCTTATATTTACCATAATAGACTGCAGTTGAAATGGCAAACCGAAACCTTAAGCATGTAAACATTCAGAACAGTTCTCCATCTCCGAAGCCTCAAAATCCGAATCGCAACCCGGACTCTCCGTCCACGGAGCGCGTGCAGAAGATGGAGGGAGCGACGCCATCGCCTAAAGTCACAAGCCCTCAGCCAGAAGCAGAAGGCAGCAGCGAGCCTCGGGAAATGACTCTGGACCTGAAGAGTTTCAGGAAACCGGGagagaaaacatttacacagaggTGCAGACTGTTTGTCGGCAATCTTCCTACTGACATTACGGAGGAAGACTTCAGAAAGCTGTTCGCCAAATATGGCGAGGCTAATGAAGTATTCATCAACAGAGACCGAGGATTCGGATTCATTCGACTGgaaacaagGACATTAGCAGAGATTGCCAAAGCAGAGTTGGATGGAACAGTGTTGCGGAACAGGCCAATTCGCATCCGGTTTGCCACACATGGAGCTGCTCTCACGGTTCGAAACCTTTCACCAGTTGTTACCAATGAGCTCCTGGAGCAGGCATTTTCACAGTTTGGGCCCGTGGAGAGGGCAGTTGTGGTGGTAGATGATCGTGGCAGACCCACAGGTAAAGGCGTTGTGGAGTTTGCCAATAAGCCTGCTGCACGAAAGGCTCTTGACCGTTGTGCTGATGGAGCCCTTTTACTTACTACGTCTCCGCGGCCAGTTATTGTTGAACCAACAGAGCAGtttgatgatgaagatggtctTTCAGAAAAATTACTGCAAAAGTCAGCACAGTATCACAAGGAAAGGGAGCAGCCTCCACGCTTTGCCCAGCCAGGCACCTTTGAGTTTGAGTACTCGTCACGTTGGAAGGCGCTTGATGAGATGGAGAAACAGCAGCGGGAGCAGGTGAACAGGAATATCCAAGAGGCCAAGGAGAAACTGGAGGCTGAGATGGAGACAGCAAGGCACGAGCACCAGCTCATGATGATGAGACAAGATCTCATGCGACGTCAAGAAGAGTTGCGCCGACTGGAGGAACTGAGAAACCAGGAACTCCAAAAGCGCAAACAGATGGAGATGAGACATGAGGAAGAGAGGCGGAGACGTGAGGAGGAAATGATGCGCCACAGAGACCAGGACGAAATGAGACGTCAGCCTGATGGTTTTAAACCTGGCTTTATGGATAGCATTGATGCAGGCCTGTACATGGTTTGGTAGAAACGCTTCGAAGATGCTTACAAGGTGAAATGATATGCAGCCAATTGCagccaatctctctctctttctttctctctctctctatctacctgtctgtcctttttctttctatctgtataaaaaaatactaatctAATTAGTTCAAACAAGGAAACCATGAGGTAAGTAGTATTTCGCTTGTTCATAATTTACTGTTCCACAATAAAGAGAAGTTTTGCATGGCTATTTTAGTAGCCCAGTAACATATCTTTCCTCTAACCAATTTGATTTCCACTAGGTGGTGCCATAGAAGTAGGAACAAATGCCCTAAACAGGCAAATAACAGTAAAGGTACTTGTATATTAGTAGTAATGAATGTCAAGATCcattctgagatgtttctgGAAAGAATAAATGCTTAGTCAGTCATAAACTAATCTGCATTTTCTTATGCAACACATGCGgttaaaagtaatttttaaattcagattacTGT

Function

symbol description
pspc1 Predicted to enable RNA binding activity. Predicted to be involved in regulation of circadian rhythm and regulation of transcription, DNA-templated. Predicted to act upstream of or within rhythmic process. Predicted to be located in cytoplasm and nuclear lumen. Predicted to be active in nucleus. Orthologous to human PSPC1 (paraspeckle component 1).

NR:

description
PREDICTED: paraspeckle component 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016363 nuclear matrix cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440266 True 3824 lncRNA 0.37 2 6870572 6874420
XM_026932254.2 False 2609 mRNA 0.45 9 6884037 6910410
XM_026932255.2 False 1799 mRNA 0.46 7 6870566 6910546

Neighbor

gene id symbol gene type direction distance location
arhgap20 LOC108259036 coding downstream 8463 6835427 ~ 6862103 (-)
mxh si:dkeyp-110c12.3,LOC108258858,LOC108434714 coding downstream 74427 6791160 ~ 6796139 (-)
LOC117595692 LOC108258862,LOC108258860,LOC108258859,LOC108258861,LOC108429797,LOC108261765 coding downstream 91276 6772355 ~ 6779290 (-)
LOC113537509 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765,LOC108258858,LOC108434714 coding downstream 99848 6742587 ~ 6770718 (-)
LOC113537618 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765 coding downstream 137210 6721328 ~ 6733356 (-)
LOC113537750 fgf14,LOC108258297,LOC108434733,LOC105911936 coding upstream 47474 6958020 ~ 7025006 (-)
si:ch211-91p5.3 NA coding upstream 158632 7069178 ~ 7082854 (-)
LOC113537541 c26hxorf38 coding upstream 174380 7084926 ~ 7090530 (-)
pcdh8 LOC108258318 coding upstream 182256 7092802 ~ 7096706 (-)
sugt1 sugt1,LOC104941757 coding upstream 246034 7156580 ~ 7181482 (-)
G371632 NA non-coding downstream 2606 6867744 ~ 6867960 (-)
G371595 NA non-coding downstream 55495 6808493 ~ 6815071 (-)
G371487 NA non-coding downstream 303621 6563849 ~ 6566945 (-)
G371454 NA non-coding downstream 334562 6529397 ~ 6536004 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 865776 6001838 ~ 6004790 (-)
G371787 NA non-coding upstream 240892 7151438 ~ 7153159 (-)
G371793 NA non-coding upstream 272630 7183176 ~ 7183386 (-)
G371929 NA non-coding upstream 500435 7410981 ~ 7415018 (-)
G371964 NA non-coding upstream 557243 7467789 ~ 7468460 (-)
G371967 NA non-coding upstream 565357 7475903 ~ 7476105 (-)
LOC113537742 LOC108258591 other downstream 507363 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 837173 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 918253 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 1323534 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 1475554 5388904 ~ 5395012 (-)
LOC113537271 LOC108258282 other upstream 148289 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 446725 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 807717 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1001664 7912210 ~ 7993096 (-)
cars2 cars2 other upstream 1158856 8069402 ~ 8084539 (-)

Expression


Co-expression Network