LOC113537271 (LOC108258282)


Basic Information

Item Value
gene id LOC113537271
gene name LOC108258282
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7058835 ~ 7068531 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU440391
ATCGAATTCCATTCACATTTATGCTTTTGGCAAATGCCTTTTTCCAAAGCCATTTACAAGTGAGGCAGTGTATAATCCAGGTATAGAGCTGCAGAGCCTACTGAGAGCCACAAGCCGCACACACCGAGACCACCTCAAAACGCAGAGGTTAAGGCAAGCTGGAGCAAACAGCTTTTCTAATCCAATCAGAGGGACGTACTGTAATGACATTAGCAAAGTCAAATTCTGCACTGATCTACACTTCATATGAATATTCAGTAACATGAATATTATTTCGCAAAATCGCATTTTCTTGCTTTTGCgcatttccagcatttttgtggcCGTTACGCACACAAGGCCTTGCGCTTGCTTTTCCCAAATGTCTTGAGACCTAGTATAGTTAATGCAGCCTGCTTCATAATTGAAACcgatttcttttatttatagacttgttttattttattttttaataggtTTGATAGACTTACAGGGTATGGATATTTAGTTTAAGGTATCAGTGTTTGCGGTGTGACTCTAAACTCATCAGTGCGCACAGCAAAAGGTGCAGGTTTCTCGGTCACGCCTCTTCTTATATTCACAcgcaagggggaaaaaagctaaaaCGCTCAGATATTAGCTCAAGGGCAACGTGTACACGTTAGGGAAAAAATGCTCCAAAGCGTGTACTATGGCCAGATTGGCCAACAGGATGTAGAAAGGTTATTGGGGAAATATGGGAAGGATGGAAGCTTTCTCCTGAGAGACAGCCAAAGTGAGCGCGGAGCTTTATGCCTCTGTGTCAGgaaAACTCCATTTGTCCACACATACAGGATTGTCCATTCACCTCAAGGCTGGGCAGTGGAGACTGAAAACAAGGAGAAGATACAGTGGTTCCAGTCACTGGATAAACTCATCGAATCCTACAAAGAAACCCCCCATAACATGGTTCCCCTACTGTATCCTCTTGAAAAATCACATCTAAATGAAGAGGAGAGACAGATTAGAGAATCGGCCTACATGGaaatgtgaaaatctcaggTGATCCACTGAGAGGGAGTGTGCCTGTGTAAATAATTTTCCCTTTTCTAAACTACCTTTAACACCTAATACAAGCCTGTGCTATCTATGTGTTACCAATAAAATGAGTTTTGCCTCTATCTGCCTTTGTTTAGCTGGTGTATTTATATCTTCAAGTGACCCTACTGGCCTTTTGTTATTCAAGGCCGTGAAAACattccacaagatggcagtggAGCTGCTAAAGTTTGTGTGATTGACAGCATGCTTTCACTTCTGACTTCCCCTAAAGTTCAGAAGAAACTTTGTAAATTCAAGGCACCCTCCCAATACATGAAACCAAGTCTGTGTGATGGATTCTGTGCTCAAGAAATTTCCAGTCAAAACTGTTTAGCCTGTGTGCTGGATTCAGGAAATTCCTGTGAATAACTGTGAAAATAGTGTGTAAACTGCAGATAAGGTCAAACAAAGACATGTTTCTTCCATTTATTAATCGCAATGTTTTACTACCTGGCCTATATCTAGTGGCCCTTCATTCTTCTCTACGCTTTGCTAGGATGTGTTGTTCAGTTTTTATACAAAGTGAGTTGTTTTAAATGCATGAAAAAGTGATGATCTGCACAAAGTATCTTTACTAAAGATAAGGTTTTGATAAAATacaggtcattttttttaatgataaaccTGACTGGAAGGAAAATACCAAATATTTTGACAATATGTTTGACAAGAATGTTCAATAATTAATGTGccaaaaatgtgcaaattgcACTTGTCAGGAGAAATGACAACAATTACTACTTATTATCTGTATTGTTTAAACAGTGCATGTTAATTAACTAAGTTCTGATAAATGTATTTCTTACATTGCCTAAAGCATGCAAATAaactcatattttttttaaa
>XM_034299965.1
CAGTGTATAATCCAGGTATAGAGCTGCAGAGCCTACTGAGAGCCACAAGCCGCACACACCGAGACCACCTCAAAACGCAGAGGTTAAGGCAAGCTGGAGCAAACAGCTTTTCTAATCCAATCAGAGGGACGTACTGTAATGACATTAGCAAAGTCAAATTCTGCACTGATCTACACTTCATATGAATATTCAGTAACATGAATATTATTTCGCAAAATCGCATTTTCTTGCTTTTGCgcatttccagcatttttgtggcCGTTACGCACACAAGGCCTTGCGCTTGCTTTTCCCAAATGTCTTGAGACCTAGTATAGTTAATGCAGCCTGCTTCATAATTGAAACcgatttcttttatttatagacttgttttattttattttttaataggtTTGATAGACTTACAGGGTATGGATATTTAGTTTAAGGTATCAGTGTTTGCGGTGTGACTCTAAACTCATCAGTGCGCACAGCAAAAGGTGCAGGTTTCTCGGTCACGCCTCTTCTTATATTCACAcgcaagggggaaaaaagctaaaaCGCTCAGATATTAGCTCAAGGGCAACGTGTACACGTTAGGGAAAAAATGCTCCAAAGCGTGTACTATGGCCAGATTGGCCAACAGGATGTAGAAAGGTTATTGGGGAAATATGGGAAGGATGGAAGCTTTCTCCTGAGAGACAGCCAAAGTGAGCGCGGAGCTTTATGCCTCTGTGTCAGgaaAACTCCATTTGTCCACACATACAGGATTGTCCATTCACCTCAAGGCTGGGCAGTGGAGACTGAAAACAAGGAGAAGATACAGTGGTTCCAGTCACTGGATAAACTCATCGAATCCTACAAAGAAACCCCCCATAACATGGTTCCCCTACTGTATCCTCTTGAAAAATCACATCTAAATGAAGAGGAGAGACAGATTAGAGCAGAATCGGCCTACATGGaaatgtgaaaatctcaggTGATCCACTGAGAGGGAGTGTGCCTGTGTAAATAATTTTCCCTTTTCTAAACTACCTTTAACACCTAATACAAGCCTGTGCTATCTATGTGTTACCAATAAAATGAGTTTTGCCTCTATCTGCCTTTGTTTAGCTGGTGTATTTATATCTTCAAGTGACCCTACTGGCCTTTTGTTATTCAAGGCCGTGAAAACattccacaagatggcagtggAGCTGCTAAAGTTTGTGTGATTGACAGCATGCTTTCACTTCTGACTTCCCCTAAAGTTCAGAAGAAACTTTGTAAATTCAAGGCACCCTCCCAATACATGAAACCAAGTCTGTGTGATGGATTCTGTGCTCAAGAAATTTCCAGTCAAAACTGTTTAGCCTGTGTGCTGGATTCAGGAAATTCCTGTGAATAACTGTGAAAATAGTGTGTAAACTGCAGATAAGGTCAAACAAAGACATGTTTCTTCCATTTATTAATCGCAATGTTTTACTACCTGGCCTATATCTAGTGGCCCTTCATTCTTCTCTACGCTTTGCTAGGATGTGTTGTTCAGTTTTTATACAAAGTGAGTTGTTTTAAATGCATGAAAAAGTGATGATCTGCACAAAGTATCTTTACTAAAGATAAGGTTTTGATAAAATacaggtcattttttttaatgataaaccTGACTGGAAGGAAAATACCAAATATTTTGACAATATGTTTGACAAGAATGTTCAATAATTAATGTGccaaaaatgtgcaaattgcACTTGTCAGGAGAAATGACAACAATTACTACTTATTATCTGTATTGTTTAAACAGTGCATGTTAATTAACTAAGTTCTGATAAATGTATTTCTTACATTGCCTAAAGCATGCAAATAaactcatattttttttaaa
>XM_034299966.1
AGGCAGTGTATAATCCAGGTATAGAGCTGCAGAGCCTACTGAGAGCCACAAGCCGCACACACCGAGACCACCTCAAAACGCAGAGGTTAAGGCAAGCTGGAGCAAACAGCTTTTCTAATCCAATCAGAGGGACGTACTGTAATGACATTAGCAAAGTCAAATTCTGCACTGATCTACACTTCATATGAATATTCAGTAACATGAATATTATTTCGCAAAATCGCATTTTCTTGCTTTTGCgcatttccagcatttttgtggcCGTTACGCACACAAGGCCTTGCGCTTGCTTTTCCCAAATGTCTTGAGACCTAGTATAGTTAATGCAGCCTGCTTCATAATTGAAACcgatttcttttatttatagacttgttttattttattttttaataggtTTGATAGACTTACAGGGTATGGATATTTAGTTTAAGGTATCAGTGTTTGCGGTGTGACTCTAAACTCATCAGTGCGCACAGCAAAAGGTGCAGGTTTCTCGGTCACGCCTCTTCTTATATTCACAcgcaagggggaaaaaagctaaaaCGCTCAGATATTAGCTCAAGGGCAACGTGTACACGTTAGGGAAAAAATGCTCCAAAGCGTGTACTATGGCCAGATTGGCCAACAGGATGTAGAAAGGTTATTGGGGAAATATGGGAAGGATGGAAGCTTTCTCCTGAGAGACAGCCAAAGTGAGCGCGGAGCTTTATGCCTCTGTGTCAGgaaAACTCCATTTGTCCACACATACAGGATTGTCCATTCACCTCAAGGCTGGGCAGTGGAGACTGAAAACAAGGAGAAGATACAGTGGTTCCAGTCACTGGATAAACTCATCGAATCCTACAAAGAAACCCCCCATAACATGGTTCCCCTACTGTATCCTCTTGAAAAATCACATCTAAATGAAGAGGAGAGACAGATTAGAGAATCGGCCTACATGGaaatgtgaaaatctcaggTGATCCACTGAGAGGGAGTGTGCCTGTGTAAATAATTTTCCCTTTTCTAAACTACCTTTAACACCTAATACAAGCCTGTGCTATCTATGTGTTACCAATAAAATGAGTTTTGCCTCTATCTGCCTTTGTTTAGCTGGTGTATTTATATCTTCAAGTGACCCTACTGGCCTTTTGTTATTCAAGGCCGTGAAAACattccacaagatggcagtggAGCTGCTAAAGTTTGTGTGATTGACAGCATGCTTTCACTTCTGACTTCCCCTAAAGTTCAGAAGAAACTTTGTAAATTCAAGGCACCCTCCCAATACATGAAACCAAGTCTGTGTGATGGATTCTGTGCTCAAGAAATTTCCAGTCAAAACTGTTTAGCCTGTGTGCTGGATTCAGGAAATTCCTGTGAATAACTGTGAAAATAGTGTGTAAACTGCAGATAAGGTCAAACAAAGACATGTTTCTTCCATTTATTAATCGCAATGTTTTACTACCTGGCCTATATCTAGTGGCCCTTCATTCTTCTCTACGCTTTGCTAGGATGTGTTGTTCAGTTTTTATACAAAGTGAGTTGTTTTAAATGCATGAAAAAGTGATGATCTGCACAAAGTATCTTTACTAAAGATAAGGTTTTGATAAAATacaggtcattttttttaatgataaaccTGACTGGAAGGAAAATACCAAATATTTTGACAATATGTTTGACAAGAATGTTCAATAATTAATGTGccaaaaatgtgcaaattgcACTTGTCAGGAGAAATGACAACAATTACTACTTATTATCTGTATTGTTTAAACAGTGCATGTTAATTAACTAAGTTCTGATAAATGTATTTCTTACATTGCCTAAAGCATGCAAATAaactcatattttttttaaa
>XR_004577289.1
GCAGTGTATAATCCAGGTATAGAGCTGCAGAGCCTACTGAGAGCCACAAGCCGCACACACCGAGACCACCTCAAAACGCAGAGGTTAAGGCAAGCTGGAGCAAACAGCTTTTCTAATCCAATCAGAGGGACGTACTGTAATGACATTAGCAAAGTCAAATTCTGCACTGATCTACACTTCATATGAATATTCAGTAACATGAATATTATTTCGCAAAATCGCATTTTCTTGCTTTTGCgcatttccagcatttttgtggcCGTTACGCACACAAGGCCTTGCGCTTGCTTTTCCCAAATGTCTTGAGACCTAGTATAGTTAATGCAGCCTGCTTCATAATTGAAACcgatttcttttatttatagacttgttttattttattttttaataggtTTGATAGACTTACAGGGTATGGATATTTAGTTTAAGGTATCAGTGTTTGCGGTGTGACTCTAAACTCATCAGTGCGCACAGCAAAAGGTGCAGGTTTCTCGGTCACGCCTCTTCTTATATTCACAcgcaagggggaaaaaagctaaaaCGCTCAGATATTAGCTCAAGGGCAACGTGTACACGTTAGGGAAAAAATGCTCCAAAGCGTGTACTATGGCCAGATTGGCCAACAGGATGTAGAAAGGTTATTGGGGAAATATGGGAAGGATGGAAGCTTTCTCCTGAGAGACAGCCAAAGTGAGCGCGGAGCTTTATGCCTCTGTGTCAGgaaAACTCCATTTGTCCACACATACAGGATTGTCCATTCACCTCAAGGCTGGGCAGTGGAGACTGAAAACAAGGAGAAGATACAGTGGTTCCAGTCACTGGATAAACTCATCGAATCCTACAAAGAAACCCCCCATAACATGGTTCCCCTACTGTATCCTCTTGAAAAATCACATCTAAATGAAGAGGAGAGACAGATTAGAGCAGAATCGGCCTACATGGaaatgtgaaaatctcaggTGATCCACTGAGAGGGAGTGTGCCTGTCTGGTGTATTTATATCTTCAAGTGACCCTACTGGCCTTTTGTTATTCAAGGCCGTGAAAACattccacaagatggcagtggAGCTGCTAAAGTTTGTGTGATTGACAGCATGCTTTCACTTCTGACTTCCCCTAAAGTTCAGAAGAAACTTTGTAAATTCAAGGCACCCTCCCAATACATGAAACCAAGTCTGTGTGATGGATTCTGTGCTCAAGAAATTTCCAGTCAAAACTGTTTAGCCTGTGTGCTGGATTCAGGAAATTCCTGTGAATAACTGTGAAAATAGTGTGTAAACTGCAGATAAGGTCAAACAAAGACATGTTTCTTCCATTTATTAATCGCAATGTTTTACTACCTGGCCTATATCTAGTGGCCCTTCATTCTTCTCTACGCTTTGCTAGGATGTGTTGTTCAGTTTTTATACAAAGTGAGTTGTTTTAAATGCATGAAAAAGTGATGATCTGCACAAAGTATCTTTACTAAAGATAAGGTTTTGATAAAATacaggtcattttttttaatgataaaccTGACTGGAAGGAAAATACCAAATATTTTGACAATATGTTTGACAAGAATGTTCAATAATTAATGTGccaaaaatgtgcaaattgcACTTGTCAGGAGAAATGACAACAATTACTACTTATTATCTGTATTGTTTAAACAGTGCATGTTAATTAACTAAGTTCTGATAAATGTATTTCTTACATTGCCTAAAGCATGCAAATAaactcatattttttttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440391 True 1905 TUCP 0.39 4 7058835 7068531
XM_034299965.1 False 1843 mRNA 0.39 4 7058835 7068466
XM_034299966.1 False 1843 mRNA 0.39 4 7058835 7068469
XR_004577289.1 False 1738 misc_RNA 0.39 5 7058835 7068467

Neighbor

gene id symbol gene type direction distance location
LOC113537750 fgf14,LOC108258297,LOC108434733,LOC105911936 coding downstream 33829 6958020 ~ 7025006 (-)
arhgap20 LOC108259036 coding downstream 196732 6835427 ~ 6862103 (-)
mxh si:dkeyp-110c12.3,LOC108258858,LOC108434714 coding downstream 262696 6791160 ~ 6796139 (-)
LOC117595692 LOC108258862,LOC108258860,LOC108258859,LOC108258861,LOC108429797,LOC108261765 coding downstream 279545 6772355 ~ 6779290 (-)
LOC113537509 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765,LOC108258858,LOC108434714 coding downstream 288117 6742587 ~ 6770718 (-)
si:ch211-91p5.3 NA coding upstream 647 7069178 ~ 7082854 (-)
LOC113537541 c26hxorf38 coding upstream 16395 7084926 ~ 7090530 (-)
pcdh8 LOC108258318 coding upstream 24271 7092802 ~ 7096706 (-)
sugt1 sugt1,LOC104941757 coding upstream 88049 7156580 ~ 7181482 (-)
LOC113537349 LOC108258693 coding upstream 116271 7184802 ~ 7201325 (-)
G371634 NA non-coding downstream 157492 6891766 ~ 6901343 (-)
G371625 NA non-coding downstream 177055 6879870 ~ 6881780 (-)
G371632 NA non-coding downstream 190875 6867744 ~ 6867960 (-)
G371595 NA non-coding downstream 243764 6808493 ~ 6815071 (-)
G371487 NA non-coding downstream 491890 6563849 ~ 6566945 (-)
G371787 NA non-coding upstream 82907 7151438 ~ 7153159 (-)
G371793 NA non-coding upstream 114645 7183176 ~ 7183386 (-)
G371929 NA non-coding upstream 342450 7410981 ~ 7415018 (-)
G371964 NA non-coding upstream 399258 7467789 ~ 7468460 (-)
G371967 NA non-coding upstream 407372 7475903 ~ 7476105 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other downstream 148289 6870566 ~ 6910546 (-)
LOC113537742 LOC108258591 other downstream 695632 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 1025442 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 1106522 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 1511803 5529992 ~ 5547032 (-)
LOC113537388 arhgap6 other upstream 288740 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 649732 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 843679 7912210 ~ 7993096 (-)
cars2 cars2 other upstream 1000871 8069402 ~ 8084539 (-)
LOC113537489 NA other upstream 1192904 8261435 ~ 8267272 (-)

Expression


Co-expression Network