G371787


Basic Information

Item Value
gene id G371787
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7151438 ~ 7153159 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU440449
TGAAATATTGCTGCGCTGCAATCTGGCCTCAAGGGTCAGAGTGATTACAATTGGGATGGACATTTTTGCCAAATGGATattcacattttattgaaattacTGCCATGTTAAGTATGGCTGTAGGCGGTACAGCTACTGTTACATTAAAGCTGTCAGTCATGTAGGGGTCGCTTTTTGAAATCCAGTGTGACTTCTGCATGTTAATTCAGTTTTACTGAATCTCTCTTTCGCTCCCTCTCCCTCTGGTTCATCTGTACAAATACAAGCGTCATGTGGAAAACTTTTCTAGCCAAATGGCACTCACATGGTAAGGGTTGTTTGGGTTGAATGGAGCCCTGTCATCATTGCCTTCAGGAGCCTGTCGTCTGGCCCTTGGAACTGGTTTCTTCTGCTCATCTGGATGTTGGGGTAGGTAGGACGCAGCCAGAAGATGGGCACGTCTTTGCAGAGGTCCAAAATTTTGGCACTGAGGAAGCTGTTGTCTTTCAGAGGCTGATCAGCTGCAACCCAGATTAGAGAGTCTTCTTCGAACTTGACAGGCATGACCTCATCCTCCTGTAGGAATCCAAATATACATGCGATTAATTATACCTTTGGGTTTGCTATTCAATGTGTCTTGCTATCCATGCTCCAGCAAAACAGCCCAAGGCTGCATTAGGTTAAAGAAGCTACTCGCATTTAGGAATGGCTTAAATTCC

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU440449 True 698 lncRNA 0.45 2 7151438 7153159

Neighbor

gene id symbol gene type direction distance location
pcdh8 LOC108258318 coding downstream 54732 7092802 ~ 7096706 (-)
LOC113537541 c26hxorf38 coding downstream 60908 7084926 ~ 7090530 (-)
si:ch211-91p5.3 NA coding downstream 68584 7069178 ~ 7082854 (-)
LOC113537750 fgf14,LOC108258297,LOC108434733,LOC105911936 coding downstream 126432 6958020 ~ 7025006 (-)
arhgap20 LOC108259036 coding downstream 289335 6835427 ~ 6862103 (-)
sugt1 sugt1,LOC104941757 coding upstream 3421 7156580 ~ 7181482 (-)
LOC113537349 LOC108258693 coding upstream 31643 7184802 ~ 7201325 (-)
ednrba ednrb,LOC108258323,LOC108434743,LOC107658690,LOC107566659,LOC105911940,LOC106600156,LOC105022329 coding upstream 65206 7218365 ~ 7226649 (-)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding upstream 100592 7253751 ~ 7302564 (-)
lig4 lig4,LOC108412030,LOC107654268 coding upstream 853213 8006372 ~ 8010233 (-)
G371634 NA non-coding downstream 250095 6891766 ~ 6901343 (-)
G371625 NA non-coding downstream 269658 6879870 ~ 6881780 (-)
G371632 NA non-coding downstream 283478 6867744 ~ 6867960 (-)
G371595 NA non-coding downstream 336367 6808493 ~ 6815071 (-)
G371487 NA non-coding downstream 584493 6563849 ~ 6566945 (-)
G371793 NA non-coding upstream 30017 7183176 ~ 7183386 (-)
G371929 NA non-coding upstream 257822 7410981 ~ 7415018 (-)
G371964 NA non-coding upstream 314630 7467789 ~ 7468460 (-)
G371967 NA non-coding upstream 322744 7475903 ~ 7476105 (-)
G372034 NA non-coding upstream 431105 7584264 ~ 7584503 (-)
LOC113537271 LOC108258282 other downstream 82907 7058835 ~ 7068531 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other downstream 240892 6870566 ~ 6910546 (-)
LOC113537742 LOC108258591 other downstream 788235 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 1118045 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 1199125 5942039 ~ 5952313 (-)
LOC113537388 arhgap6 other upstream 204112 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 565104 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 759051 7912210 ~ 7993096 (-)
cars2 cars2 other upstream 916243 8069402 ~ 8084539 (-)
LOC113537489 NA other upstream 1108276 8261435 ~ 8267272 (-)

Expression


Co-expression Network