G371929


Basic Information

Item Value
gene id G371929
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7410981 ~ 7415018 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU440608
GACCATTCTGCCATTTCTCTCCTGCTGTTCCAATCTGAAGCCACGCTGAACTCGGACTGAGTCAGGCATGTGCTTTCAGTCTCACAGCGTTTTTGAAAAGCCTGGAAGGTAAATAATATTTCTGATAAACCGTTCAATGAGTCAACTTGAGTCGACCCATTAAAATCAGCTTCTGACATCAAATTGATAATCCACAAACCATCCACAAACCAAGCATGTTTATAGAGTTGACTTGCTTTGTTATGATCTTTTGCTTGACTTGCTCAGAGTTCTCATATATCTAGATGTCATTGCTGAAGGACTTTGTGTCTTTCTGCTGATTTTGTAGTTCGAAGACTTTGTTTGGGGGAAATGGAAAGGAAAGTAAGTTACAAATAagtagtgtgtgtttgagcatgGCTGCGCTTGAATGCAAGCCTGTGTGTAGAGTACGTTTATGTGTGTTACGTGTTTGGGAGCTGTTAACACTGTTTGCTGAACATACGAACATCCATtccagagcttttttttttttctgcagtggGAAGCATTATGTCTGCCACCTGGTCAGGCCAGAGACACCACTATGACAATCCAACACCAACCACAAAGGAGATAAACCACGATAGCATGGCCTCCAGCATGAGATAACACATCAAAGCCCTCCAACCCCTCATGAAAGAAAGAGTGTAATTGTAATTGCAGTGCATCTCGagttctctcttttctctttttttagacCTCGATTAATATAATAACAAGTTGTTGTTATGCAGCCGCACTGTCAGGGCGGCTATTGAAAAGATGCAGAACATCGTGGTATGTGCTTGGAAAGCTGGAGTCAACAAAGTCCTTGACAACattgttttggattgttttgaTAATTTGGCATTATTATGGGTGTTTTGAATCAAGTTGGAACGCACAAGCAAAAGTGGGTTTAGTAAAAGGTGTCAACAGTGGATCAGAAATACcatgcatttttaaagcttttcaaCCTTACACTCTTAAGGAAAAAAGGGTTCTCAAGGGTTTGTTGAATAATTAATGATTCATAGCTTTTGACCGAGCGCTCTGACAGAGAAAAGTTTTTTTAGGGCTCTGTTTTACACGTAAGGCTTTCTACAGAAGCAAAGTATgagcatttttattaatttgcaaAACCTGACTTGTGCACAAAGTTCTGAATGGTTATAATGCATTCGTTTCATATTAcagaattacagtaattatgaGATGAAGGCTTGGAGATTCTTCTCGATGCTGTTCATGTCCTCAAACTTGGAAATGAGACGCTTTTATGGAAGCGCACGCAACATGTTAAGGTAGAAAACTAAATTATATGAGTTAAAATGTAGccaatgaaagaaaatgattaaatgaaagGAATTTCCTGATGGGAATGGTGCTAGACATATAGAGTTAAATTCTGCCTACTGATTACTTCAGCTGCGGAGGCCACTGTCATTGTTTCATGTTTCCCAACTGGGAATTATGAGACACTTTTACCAACGTTTTTTTTCACAAGTCAAAAGTTCGTAATTACTGCAATTCCTACATGACGTGATTCAGCAGTCAAAtcttttcattaattttcaaCATTCATTGAAAATCCTTTCATCTGTTTTAAGTCCTTTAGAATTTCTTGATTGAGCTGAAAAAAAGCAGATGGTTAGGactggaaaaaagtggaagacAGTGCAAGTAAGCCACGCAAGAAACGTGCTCCTTgtgggaggaggaagaggaacaTTGTGTATGCTTTCACCCCTCTCCATCTCAGTTTGGAACATTTTGAAAGCTGGTGTCTCATGCTGAACGAATGCAGCGTCCCAAACCTCTTTTCTGTACTCAGAACAATTTCATAACTTGTTTCTAGTCACACTCTATAAGGTCATGTTTTGCCTTTTAGGCTTTCAAAAATAAGCAATTGCACAAGCTTCAGCCACATTTCAGGCCAGCATCCACTCAGGATTCATTAGAGATTATGTCAACCCTCAAGTTCTGTTAGTCTCCACCCTTTCTGAAGACTTGAAAAAGTGCACTGTGGAGGACAGCCCCaagtgtgcgtgcgtgtgcgtgtgtgtgtgtatgtgtgtgcgtatagGCAggggtgagaaagaaagaggaacaaTTAACATTAATACTGTTGGACgcaacatcacaaaaacatatCAGCGTAAGTCCTGAAATAGCACAGATAACTGAGTAAATCTCCCACTAAGTCAATCCTGAGAGAGGTGCTGATTATCTTTGTTGTCTGTATTGCAACACACTGCTACTTGCAGTGAGAGGCAGTCATAATCAGAGTCTGTAGGaggggtcaaaacacaggcagctAAAGTTAGATAGGGATAATTTATAATCAAAACCAAGAAGTAAAAAGATATACAGAACTCACAAACCATAGTTTGGACATAAAGTTACTAAATGCATGATAAGACTTCGCAATAAACAATGACAAAACAGGGTCAAAACTAATCAAGGACTAACatggaacaggtgaacacaatcggGTAACAAACCAGTGACCGGATAGGAgtggagacaggactagaaccaAAACATGAACATGGTGTTCATTGTCATTGTCTCGGCTGTTTAAATAGCTGGAAATGCAAAGACTGAATCTCAGCCAGCTTCCtatagtgcactacttagggttcctatagtgcactacttaggcTACTTATAATGGGAGTAGGGGGCCATTTGGAACCAGCCTATGTTTTTGGTTGAATTAATTTAGcatgataaatttaaattaatttatcatGTACATGGCAACAATAATGTTGCACCATGCAATCTACTTTTTATAATAACCCTCTCATAAAACTGAGAAGCATTTGACATGCTGTCTTCTCTGACATTAGGGCTTTTTCACACTGCGTTTAACCCCGGGTTACCGTTGTTCTAAACCCTGCTTTTAACCCCGGGGTTATGAAACCCTGCTCGGAAGCAGGGTTAGCACGGCATTGCAGTGCcaaacatgtacagtatgaaCAGATGCGATGTTAGAATGTTATGGCTAGATGCTTAGCAACAGACATGCAATCAGAAATTGAATAGCGCATGCATTTTGACTCATTGATGCGAAAGTGCAAGACAAGCCGTTACTTAAACCGGTTGCGCGCAATATTTCTCCAATCATGAATGTTGACACTGCAAATAACCCAGTGTTTAGGAAAGTACAGTGTGAAGCATCAGATTATGACTACCCGGGTCTAACTGTTAACCCCGGGTAAAGTATGAGCAATGTGAAACATGAAACAAGATAATCCAGGATTCCTTTTACCTGGGGTTTACAATGACCCAGGGGTAACTATTTCAAGTGTGAAAAACTCTATTATGAATGAAGTTTCTATCACCGATctgttagagaaaaatgttCAGCACAAACGCCGAGACTGGCCGTGTTGGTGTATCCTCCTGCATTCTTATGAGCCGGCATCGGATCAGAGGTGAGAGCCGGAAGGGTCATGGTGCCGTCACATCCCTGAACATTACAAGACTTAACCATGGTGCTGTACTTATGACCTAATCTGAATAAACTAAAGGGTATTACAAATATGTGTAATTATATTCAAACGTATATTTTAAAAGGACTATAATTAGGAAGCGAAACCCTAAAAATGGCTAATATTGACTGGTTACTTAACACTACACAGCCGTAACATAGAGCTGACCCGTGATGCATTTAGGGGGTGTCACCTGTTGAAAGGTCACTGCCCACTGATAGGTAAATGAGTGACAAATTCTTCCTTATTAATATAATAAGGTGGCGGCAGAATGTACCATTGTTTaccattaaaaatatgtatactAACAAAAATTTATTGTGAATGTGGGTGGAGTTCACATCTCCAgggtttgcatgttcttttCATGTCCATGTAGGTTTTCTCTAcctcctaaaaacatgctacTGGTGAGCTTGGTATCCTGCAATGGACATCCCATCCAGGGCGTATTCCTGCCTCGAGCCCACTGTTCCCGGGATTGGCTCGGGATCCGCCACAACCCAGAGTAAAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440608 True 4017 lncRNA 0.40 2 7410981 7415018

Neighbor

gene id symbol gene type direction distance location
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 108417 7253751 ~ 7302564 (-)
ednrba ednrb,LOC108258323,LOC108434743,LOC107658690,LOC107566659,LOC105911940,LOC106600156,LOC105022329 coding downstream 184332 7218365 ~ 7226649 (-)
LOC113537349 LOC108258693 coding downstream 209656 7184802 ~ 7201325 (-)
sugt1 sugt1,LOC104941757 coding downstream 229499 7156580 ~ 7181482 (-)
pcdh8 LOC108258318 coding downstream 314275 7092802 ~ 7096706 (-)
lig4 lig4,LOC108412030,LOC107654268 coding upstream 591354 8006372 ~ 8010233 (-)
irs2a LOC108258957,LOC108434672 coding upstream 627467 8042485 ~ 8054545 (-)
LOC113537312 LOC108259043 coding upstream 647203 8062221 ~ 8066451 (-)
LOC113537306 ube2a,ube2al,LOC108259060,LOC103029486,LOC103021436,LOC107552373,LOC105934920,LOC107588833 coding upstream 672762 8087780 ~ 8090097 (-)
ankrd10a ankrd10 coding upstream 676348 8091366 ~ 8105352 (-)
G371793 NA non-coding downstream 227595 7183176 ~ 7183386 (-)
G371787 NA non-coding downstream 257822 7151438 ~ 7153159 (-)
G371634 NA non-coding downstream 509638 6891766 ~ 6901343 (-)
G371625 NA non-coding downstream 529201 6879870 ~ 6881780 (-)
G371632 NA non-coding downstream 543021 6867744 ~ 6867960 (-)
G371964 NA non-coding upstream 52771 7467789 ~ 7468460 (-)
G371967 NA non-coding upstream 60885 7475903 ~ 7476105 (-)
G372034 NA non-coding upstream 169246 7584264 ~ 7584503 (-)
G372037 NA non-coding upstream 174796 7589814 ~ 7590030 (-)
G372038 NA non-coding upstream 178453 7593471 ~ 7593948 (-)
LOC113537271 LOC108258282 other downstream 342450 7058835 ~ 7068531 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other downstream 500435 6870566 ~ 6910546 (-)
LOC113537742 LOC108258591 other downstream 1047778 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 1377588 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 1458668 5942039 ~ 5952313 (-)
G372086 LOC108258915 other upstream 303245 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 497192 7912210 ~ 7993096 (-)
cars2 cars2 other upstream 654384 8069402 ~ 8084539 (-)
LOC113537489 NA other upstream 846417 8261435 ~ 8267272 (-)
timmdc1 timmdc1 other upstream 905850 8320868 ~ 8329026 (-)

Expression


Co-expression Network