G372038


Basic Information

Item Value
gene id G372038
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7593471 ~ 7593948 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU440723
CACTGTCTATTtctccactgctgctgctgtgggcCATATTGAAAATGGAGCGACGTGAGTCCACTAGAAGACGGTAATATCCAGCTGTTAGGCAAGCCAGGTTCATGGCATCACTGGATTCCATTATTAACGTGATAGGCTGTTTCAAAAAGAAGTTTGgcattaaaatctatttatgaCTAAAAGACAAGCTGAAAAGCACTTGTCTtgatcatactgtatattaaaactAAATAGCAAAGTAATAGTGCTTAACTGATCAGCAGGCCACATTGTACAATTTTAATAGTATACCTTGACGTCCAAAACATGTAGTTCTACCCGCACATTGACTTCATCCTCTGTGAGTATCTCAATACGATTAACATGGCTGAAGTCTGCCAGCAGGGCCACTAGATTTGTCTTGGCATTGATAACATGACTGATACCATACCTCGGTCCTACAAGTAATGTAACACCTGTTTCCTTATCCCCTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU440723 True 478 lncRNA 0.41 1 7593471 7593948

Neighbor

gene id symbol gene type direction distance location
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 290907 7253751 ~ 7302564 (-)
ednrba ednrb,LOC108258323,LOC108434743,LOC107658690,LOC107566659,LOC105911940,LOC106600156,LOC105022329 coding downstream 366822 7218365 ~ 7226649 (-)
LOC113537349 LOC108258693 coding downstream 392146 7184802 ~ 7201325 (-)
sugt1 sugt1,LOC104941757 coding downstream 411989 7156580 ~ 7181482 (-)
pcdh8 LOC108258318 coding downstream 496765 7092802 ~ 7096706 (-)
lig4 lig4,LOC108412030,LOC107654268 coding upstream 412424 8006372 ~ 8010233 (-)
irs2a LOC108258957,LOC108434672 coding upstream 448537 8042485 ~ 8054545 (-)
LOC113537312 LOC108259043 coding upstream 468273 8062221 ~ 8066451 (-)
LOC113537306 ube2a,ube2al,LOC108259060,LOC103029486,LOC103021436,LOC107552373,LOC105934920,LOC107588833 coding upstream 493832 8087780 ~ 8090097 (-)
ankrd10a ankrd10 coding upstream 497418 8091366 ~ 8105352 (-)
G372037 NA non-coding downstream 3441 7589814 ~ 7590030 (-)
G372034 NA non-coding downstream 8968 7584264 ~ 7584503 (-)
G371967 NA non-coding downstream 117366 7475903 ~ 7476105 (-)
G371964 NA non-coding downstream 125011 7467789 ~ 7468460 (-)
G371929 NA non-coding downstream 178453 7410981 ~ 7415018 (-)
G372108 NA non-coding upstream 46225 7640173 ~ 7640386 (-)
G372095 NA non-coding upstream 88737 7682685 ~ 7704388 (-)
G372085 NA non-coding upstream 136762 7730710 ~ 7731108 (-)
G372132 NA non-coding upstream 186114 7780062 ~ 7781205 (-)
G372168 NA non-coding upstream 315176 7909124 ~ 7909552 (-)
LOC113537388 arhgap6 other downstream 114962 7357271 ~ 7478509 (-)
LOC113537271 LOC108258282 other downstream 524940 7058835 ~ 7068531 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other downstream 682925 6870566 ~ 6910546 (-)
LOC113537742 LOC108258591 other downstream 1230268 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 1560078 6015726 ~ 6033393 (-)
G372086 LOC108258915 other upstream 124315 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 318262 7912210 ~ 7993096 (-)
cars2 cars2 other upstream 475454 8069402 ~ 8084539 (-)
LOC113537489 NA other upstream 667487 8261435 ~ 8267272 (-)
timmdc1 timmdc1 other upstream 726920 8320868 ~ 8329026 (-)

Expression


Co-expression Network